Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00720

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_00715 and OKFHMN_00720 are separated by 255 nucleotidesOKFHMN_00720 and phoQ are separated by 600 nucleotides OKFHMN_00715: OKFHMN_00715 - terminase, at 44,811 to 45,353 _00715 OKFHMN_00720: OKFHMN_00720 - hypothetical protein, at 45,609 to 45,890 _00720 OKFHMN_00725: phoQ - two-component system sensor histidine kinase PhoQ, at 46,491 to 47,951 phoQ Position (kb) 45 46Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 44.796 kb on + strandat 44.807 kb on - strandat 44.906 kb on + strand, within OKFHMN_00715at 45.625 kb on + strandat 46.187 kb on + strandat 46.349 kb on + strandat 46.723 kb on + strand, within phoQat 46.724 kb on - strand, within phoQat 46.888 kb on + strand, within phoQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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44,796 + +0.2
44,807 - +0.4
44,906 + OKFHMN_00715 0.17 +0.6
45,625 + -5.5
46,187 + -0.1
46,349 + +0.3
46,723 + phoQ OKFHMN_00725 0.16 +0.8
46,724 - phoQ OKFHMN_00725 0.16 -0.4
46,888 + phoQ OKFHMN_00725 0.27 +0.1

Or see this region's nucleotide sequence