Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_00640 and OKFHMN_00645 are separated by 610 nucleotides OKFHMN_00645 and OKFHMN_00650 overlap by 8 nucleotides OKFHMN_00650 and OKFHMN_00655 overlap by 11 nucleotides OKFHMN_00655 and OKFHMN_00660 overlap by 8 nucleotides OKFHMN_00660 and OKFHMN_00665 are separated by 5 nucleotides
OKFHMN_00640: OKFHMN_00640 - integrase, at 35,455 to 36,684
_00640
OKFHMN_00645: OKFHMN_00645 - host cell division inhibitor Icd-like protein, at 37,295 to 38,239
_00645
OKFHMN_00650: OKFHMN_00650 - hypothetical protein, at 38,232 to 38,444
_00650
OKFHMN_00655: OKFHMN_00655 - Putative prophage protein, at 38,434 to 38,898
_00655
OKFHMN_00660: OKFHMN_00660 - hypothetical protein, at 38,891 to 39,124
_00660
OKFHMN_00665: OKFHMN_00665 - DUF4222 domain-containing protein, at 39,130 to 39,429
_00665
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.998 kb on - strand at 37.047 kb on + strand at 37.288 kb on + strand at 37.441 kb on - strand, within OKFHMN_00645 at 37.447 kb on - strand, within OKFHMN_00645 at 37.447 kb on - strand, within OKFHMN_00645 at 37.449 kb on - strand, within OKFHMN_00645 at 37.463 kb on - strand, within OKFHMN_00645 at 37.463 kb on - strand, within OKFHMN_00645 at 37.505 kb on + strand, within OKFHMN_00645 at 37.532 kb on - strand, within OKFHMN_00645 at 37.956 kb on + strand, within OKFHMN_00645 at 38.004 kb on - strand, within OKFHMN_00645 at 38.042 kb on - strand, within OKFHMN_00645 at 38.061 kb on + strand, within OKFHMN_00645 at 38.062 kb on - strand, within OKFHMN_00645
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 36,998 - +0.3 37,047 + +0.8 37,288 + +2.0 37,441 - OKFHMN_00645 0.15 -0.4 37,447 - OKFHMN_00645 0.16 +0.6 37,447 - OKFHMN_00645 0.16 +1.0 37,449 - OKFHMN_00645 0.16 +0.5 37,463 - OKFHMN_00645 0.18 +1.2 37,463 - OKFHMN_00645 0.18 -0.4 37,505 + OKFHMN_00645 0.22 -0.6 37,532 - OKFHMN_00645 0.25 +1.5 37,956 + OKFHMN_00645 0.70 +1.0 38,004 - OKFHMN_00645 0.75 +0.6 38,042 - OKFHMN_00645 0.79 -1.1 38,061 + OKFHMN_00645 0.81 -1.8 38,062 - OKFHMN_00645 0.81 -1.0
Or see this region's nucleotide sequence