Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dAP2 and traX are separated by 58 nucleotides traX and OKFHMN_00450 are separated by 19 nucleotides
OKFHMN_00440: dAP2 - Uncharacterized protein in traX-finO intergenic region, at 88,881 to 89,741
dAP2
OKFHMN_00445: traX - conjugal transfer pilus acetylase TraX, at 89,800 to 90,546
traX
OKFHMN_00450: OKFHMN_00450 - TraI domain-containing protein, at 90,566 to 91,822
_00450
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 89.652 kb on + strand, within dAP2 at 89.652 kb on + strand, within dAP2 at 89.654 kb on - strand, within dAP2 at 89.658 kb on - strand at 89.674 kb on - strand at 89.674 kb on - strand at 89.675 kb on + strand at 89.676 kb on - strand at 89.746 kb on - strand at 89.755 kb on + strand at 89.756 kb on - strand at 89.756 kb on - strand at 89.764 kb on + strand at 89.764 kb on + strand at 89.770 kb on + strand at 89.770 kb on + strand at 89.840 kb on + strand at 89.840 kb on + strand at 89.840 kb on + strand at 89.841 kb on - strand at 89.938 kb on + strand, within traX at 89.939 kb on - strand, within traX at 89.967 kb on + strand, within traX at 89.968 kb on - strand, within traX at 89.968 kb on - strand, within traX at 89.968 kb on - strand, within traX at 89.968 kb on - strand, within traX at 90.036 kb on - strand, within traX at 90.135 kb on + strand, within traX at 90.136 kb on - strand, within traX at 90.136 kb on - strand, within traX at 90.202 kb on - strand, within traX at 90.213 kb on - strand, within traX at 90.213 kb on - strand, within traX at 90.233 kb on + strand, within traX at 90.234 kb on - strand, within traX at 90.234 kb on - strand, within traX at 90.236 kb on + strand, within traX at 90.237 kb on - strand, within traX at 90.237 kb on - strand, within traX at 90.295 kb on - strand, within traX at 90.295 kb on - strand, within traX at 90.413 kb on - strand, within traX at 90.516 kb on + strand at 90.516 kb on + strand at 90.517 kb on - strand at 90.565 kb on - strand at 90.565 kb on - strand at 90.610 kb on + strand at 90.701 kb on + strand, within OKFHMN_00450 at 90.701 kb on + strand, within OKFHMN_00450 at 90.701 kb on + strand, within OKFHMN_00450 at 90.702 kb on - strand, within OKFHMN_00450 at 90.897 kb on - strand, within OKFHMN_00450 at 90.897 kb on - strand, within OKFHMN_00450 at 90.897 kb on - strand, within OKFHMN_00450 at 91.045 kb on + strand, within OKFHMN_00450 at 91.075 kb on + strand, within OKFHMN_00450 at 91.075 kb on + strand, within OKFHMN_00450 at 91.079 kb on - strand, within OKFHMN_00450 at 91.260 kb on + strand, within OKFHMN_00450 at 91.260 kb on + strand, within OKFHMN_00450 at 91.260 kb on + strand, within OKFHMN_00450 at 91.272 kb on + strand, within OKFHMN_00450 at 91.273 kb on - strand, within OKFHMN_00450 at 91.277 kb on - strand, within OKFHMN_00450 at 91.455 kb on - strand, within OKFHMN_00450 at 91.500 kb on + strand, within OKFHMN_00450 at 91.500 kb on + strand, within OKFHMN_00450 at 91.500 kb on + strand, within OKFHMN_00450 at 91.500 kb on + strand, within OKFHMN_00450 at 91.539 kb on + strand, within OKFHMN_00450 at 91.539 kb on + strand, within OKFHMN_00450 at 91.539 kb on + strand, within OKFHMN_00450 at 91.540 kb on - strand, within OKFHMN_00450 at 91.540 kb on - strand, within OKFHMN_00450 at 91.540 kb on - strand, within OKFHMN_00450 at 91.582 kb on + strand, within OKFHMN_00450 at 91.583 kb on - strand, within OKFHMN_00450 at 91.645 kb on - strand, within OKFHMN_00450 at 91.645 kb on - strand, within OKFHMN_00450 at 91.657 kb on + strand, within OKFHMN_00450 at 91.657 kb on + strand, within OKFHMN_00450 at 91.657 kb on + strand, within OKFHMN_00450 at 91.658 kb on - strand, within OKFHMN_00450 at 91.771 kb on - strand at 91.771 kb on - strand at 91.771 kb on - strand at 91.895 kb on - strand at 92.312 kb on + strand at 92.313 kb on - strand at 92.313 kb on - strand at 92.396 kb on + strand at 92.445 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 89,652 + dAP2 OKFHMN_00440 0.90 -0.2 89,652 + dAP2 OKFHMN_00440 0.90 -1.3 89,654 - dAP2 OKFHMN_00440 0.90 +0.8 89,658 - -1.4 89,674 - +1.6 89,674 - +0.5 89,675 + -1.5 89,676 - +0.1 89,746 - +1.1 89,755 + +0.0 89,756 - +0.5 89,756 - -0.2 89,764 + +0.6 89,764 + -1.1 89,770 + +1.5 89,770 + -1.1 89,840 + +2.5 89,840 + -1.0 89,840 + -0.8 89,841 - -0.7 89,938 + traX OKFHMN_00445 0.18 +1.3 89,939 - traX OKFHMN_00445 0.19 -0.9 89,967 + traX OKFHMN_00445 0.22 +0.0 89,968 - traX OKFHMN_00445 0.22 -1.4 89,968 - traX OKFHMN_00445 0.22 -0.4 89,968 - traX OKFHMN_00445 0.22 +0.0 89,968 - traX OKFHMN_00445 0.22 +0.9 90,036 - traX OKFHMN_00445 0.32 -0.1 90,135 + traX OKFHMN_00445 0.45 -1.0 90,136 - traX OKFHMN_00445 0.45 -0.2 90,136 - traX OKFHMN_00445 0.45 +0.9 90,202 - traX OKFHMN_00445 0.54 +0.2 90,213 - traX OKFHMN_00445 0.55 -0.7 90,213 - traX OKFHMN_00445 0.55 -0.0 90,233 + traX OKFHMN_00445 0.58 +1.3 90,234 - traX OKFHMN_00445 0.58 +0.5 90,234 - traX OKFHMN_00445 0.58 -1.5 90,236 + traX OKFHMN_00445 0.58 +0.2 90,237 - traX OKFHMN_00445 0.59 +0.1 90,237 - traX OKFHMN_00445 0.59 -0.1 90,295 - traX OKFHMN_00445 0.66 -1.0 90,295 - traX OKFHMN_00445 0.66 +0.3 90,413 - traX OKFHMN_00445 0.82 -0.2 90,516 + -0.9 90,516 + -0.7 90,517 - +0.8 90,565 - -0.1 90,565 - +1.6 90,610 + +0.1 90,701 + OKFHMN_00450 0.11 +1.3 90,701 + OKFHMN_00450 0.11 -0.3 90,701 + OKFHMN_00450 0.11 -0.9 90,702 - OKFHMN_00450 0.11 -1.0 90,897 - OKFHMN_00450 0.26 +1.8 90,897 - OKFHMN_00450 0.26 +0.0 90,897 - OKFHMN_00450 0.26 +1.8 91,045 + OKFHMN_00450 0.38 +0.1 91,075 + OKFHMN_00450 0.40 -0.3 91,075 + OKFHMN_00450 0.40 +0.1 91,079 - OKFHMN_00450 0.41 +0.6 91,260 + OKFHMN_00450 0.55 +0.3 91,260 + OKFHMN_00450 0.55 -0.1 91,260 + OKFHMN_00450 0.55 +0.8 91,272 + OKFHMN_00450 0.56 +1.0 91,273 - OKFHMN_00450 0.56 -0.6 91,277 - OKFHMN_00450 0.57 +0.2 91,455 - OKFHMN_00450 0.71 +0.5 91,500 + OKFHMN_00450 0.74 +0.3 91,500 + OKFHMN_00450 0.74 -0.5 91,500 + OKFHMN_00450 0.74 -3.0 91,500 + OKFHMN_00450 0.74 -0.7 91,539 + OKFHMN_00450 0.77 -0.6 91,539 + OKFHMN_00450 0.77 -0.3 91,539 + OKFHMN_00450 0.77 +0.3 91,540 - OKFHMN_00450 0.77 +0.8 91,540 - OKFHMN_00450 0.77 -1.2 91,540 - OKFHMN_00450 0.77 +0.9 91,582 + OKFHMN_00450 0.81 +0.2 91,583 - OKFHMN_00450 0.81 -1.1 91,645 - OKFHMN_00450 0.86 +0.0 91,645 - OKFHMN_00450 0.86 -2.0 91,657 + OKFHMN_00450 0.87 +0.1 91,657 + OKFHMN_00450 0.87 +0.6 91,657 + OKFHMN_00450 0.87 +0.2 91,658 - OKFHMN_00450 0.87 -1.6 91,771 - -0.9 91,771 - +0.9 91,771 - -0.9 91,895 - +0.2 92,312 + +1.1 92,313 - +0.5 92,313 - +0.6 92,396 + +0.6 92,445 + -0.2
Or see this region's nucleotide sequence