Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sopA and sopA overlap by 1 nucleotides sopA and tnp-IS3 are separated by 739 nucleotides
OKFHMN_00130: sopA - plasmid-partitioning protein SopA, at 28,349 to 29,320
sopA
OKFHMN_00135: sopA - plasmid-partitioning protein SopA, at 29,320 to 30,486
sopA
OKFHMN_00140: tnp-IS3 - IS3 family transposase, at 31,226 to 31,552
tnp-IS3
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1
2 at 28.323 kb on + strand at 28.323 kb on + strand at 28.330 kb on - strand at 28.334 kb on + strand at 28.397 kb on + strand at 28.454 kb on - strand, within sopA at 28.454 kb on - strand, within sopA at 28.454 kb on - strand, within sopA at 28.456 kb on - strand, within sopA at 28.497 kb on - strand, within sopA at 28.502 kb on - strand, within sopA at 28.539 kb on - strand, within sopA at 28.569 kb on - strand, within sopA at 28.620 kb on - strand, within sopA at 28.674 kb on - strand, within sopA at 28.980 kb on - strand, within sopA at 29.069 kb on - strand, within sopA at 29.093 kb on - strand, within sopA at 29.150 kb on - strand, within sopA at 29.183 kb on - strand, within sopA at 29.264 kb on - strand at 29.303 kb on - strand at 29.569 kb on - strand, within sopA at 29.569 kb on - strand, within sopA at 29.593 kb on - strand, within sopA at 29.734 kb on - strand, within sopA at 29.734 kb on - strand, within sopA at 29.784 kb on - strand, within sopA at 29.908 kb on - strand, within sopA at 29.946 kb on - strand, within sopA at 30.029 kb on + strand, within sopA at 30.080 kb on - strand, within sopA at 30.293 kb on - strand, within sopA at 30.455 kb on - strand at 30.465 kb on + strand at 30.622 kb on - strand at 30.635 kb on - strand at 30.635 kb on - strand at 30.650 kb on + strand at 30.651 kb on - strand at 30.651 kb on - strand at 30.686 kb on + strand at 30.686 kb on + strand at 30.686 kb on + strand at 30.687 kb on - strand at 30.740 kb on - strand at 30.740 kb on - strand at 30.760 kb on + strand at 30.791 kb on + strand at 30.792 kb on - strand at 30.820 kb on + strand at 30.820 kb on + strand at 30.859 kb on - strand at 30.946 kb on + strand at 31.018 kb on + strand at 31.064 kb on - strand at 31.076 kb on - strand at 31.076 kb on - strand at 31.118 kb on + strand at 31.118 kb on + strand at 31.119 kb on - strand at 31.153 kb on + strand at 31.154 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 28,323 + -0.7 28,323 + -0.6 28,330 - +0.1 28,334 + +1.0 28,397 + -0.2 28,454 - sopA OKFHMN_00130 0.11 -1.3 28,454 - sopA OKFHMN_00130 0.11 +1.3 28,454 - sopA OKFHMN_00130 0.11 -0.9 28,456 - sopA OKFHMN_00130 0.11 -0.0 28,497 - sopA OKFHMN_00130 0.15 -0.0 28,502 - sopA OKFHMN_00130 0.16 +0.3 28,539 - sopA OKFHMN_00130 0.20 -0.8 28,569 - sopA OKFHMN_00130 0.23 -1.0 28,620 - sopA OKFHMN_00130 0.28 +2.1 28,674 - sopA OKFHMN_00130 0.33 -1.6 28,980 - sopA OKFHMN_00130 0.65 -0.7 29,069 - sopA OKFHMN_00130 0.74 +0.2 29,093 - sopA OKFHMN_00130 0.77 -0.6 29,150 - sopA OKFHMN_00130 0.82 +0.6 29,183 - sopA OKFHMN_00130 0.86 +0.1 29,264 - -0.0 29,303 - -0.0 29,569 - sopA OKFHMN_00135 0.21 -0.9 29,569 - sopA OKFHMN_00135 0.21 -0.9 29,593 - sopA OKFHMN_00135 0.23 -0.9 29,734 - sopA OKFHMN_00135 0.35 -0.3 29,734 - sopA OKFHMN_00135 0.35 -0.6 29,784 - sopA OKFHMN_00135 0.40 -0.3 29,908 - sopA OKFHMN_00135 0.50 +0.3 29,946 - sopA OKFHMN_00135 0.54 -1.4 30,029 + sopA OKFHMN_00135 0.61 -0.2 30,080 - sopA OKFHMN_00135 0.65 -0.2 30,293 - sopA OKFHMN_00135 0.83 -0.8 30,455 - -0.9 30,465 + -1.7 30,622 - +0.9 30,635 - -1.7 30,635 - +0.9 30,650 + +1.5 30,651 - -0.1 30,651 - -0.8 30,686 + -0.9 30,686 + -0.3 30,686 + -0.2 30,687 - -0.6 30,740 - -1.1 30,740 - -0.1 30,760 + +0.6 30,791 + +0.0 30,792 - -0.1 30,820 + -0.5 30,820 + +0.6 30,859 - -0.2 30,946 + +1.3 31,018 + +0.5 31,064 - +1.2 31,076 - +0.1 31,076 - +0.0 31,118 + +0.2 31,118 + -1.3 31,119 - +1.3 31,153 + -0.6 31,154 - -0.9
Or see this region's nucleotide sequence