Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28565

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnarI and Tyr_trna are separated by 539 nucleotidesTyr_trna and Tyr_trna are separated by 209 nucleotidesTyr_trna and purU are separated by 159 nucleotides OKFHMN_28555: narI - respiratory nitrate reductase subunit gamma, at 5,479,689 to 5,480,366 narI OKFHMN_28560: Tyr_trna - tRNA-Tyr(gta), at 5,480,906 to 5,480,990 _trna OKFHMN_28565: Tyr_trna - tRNA-Tyr(gta), at 5,481,200 to 5,481,284 _trna OKFHMN_28570: purU - formyltetrahydrofolate deformylase, at 5,481,444 to 5,482,286 purU Position (kb) 5481 5482Strain fitness (log2 ratio) -1 0 1at 5480.336 kb on + strandat 5480.375 kb on + strandat 5481.014 kb on - strandat 5481.044 kb on - strandat 5481.120 kb on - strandat 5481.552 kb on - strand, within purUat 5481.670 kb on + strand, within purUat 5481.915 kb on + strand, within purUat 5482.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,480,336 + +1.7
5,480,375 + +0.0
5,481,014 - +0.0
5,481,044 - -0.3
5,481,120 - -0.5
5,481,552 - purU OKFHMN_28570 0.13 -1.2
5,481,670 + purU OKFHMN_28570 0.27 -1.6
5,481,915 + purU OKFHMN_28570 0.56 -1.3
5,482,253 + +1.7

Or see this region's nucleotide sequence