Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26670

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgAF and yoaF are separated by 182 nucleotidesyoaF and yeaO are separated by 21 nucleotidesyeaO and nimT are separated by 54 nucleotides OKFHMN_26660: gAF - GAF domain, at 5,130,251 to 5,131,099 gAF OKFHMN_26665: yoaF - DUF333 domain-containing protein, at 5,131,282 to 5,131,536 yoaF OKFHMN_26670: yeaO - Uncharacterized protein YeaO, at 5,131,558 to 5,131,905 yeaO OKFHMN_26675: nimT - 2-nitroimidazole transporter, at 5,131,960 to 5,133,141 nimT Position (kb) 5131 5132Strain fitness (log2 ratio) -2 -1 0 1 2at 5131.192 kb on + strandat 5131.262 kb on + strandat 5131.266 kb on + strandat 5131.399 kb on + strand, within yoaFat 5131.566 kb on + strandat 5131.566 kb on + strandat 5131.567 kb on - strandat 5131.567 kb on - strandat 5131.947 kb on - strandat 5132.011 kb on + strandat 5132.307 kb on + strand, within nimTat 5132.459 kb on + strand, within nimTat 5132.675 kb on - strand, within nimTat 5132.780 kb on - strand, within nimTat 5132.833 kb on + strand, within nimT

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
5,131,192 + +0.5
5,131,262 + +1.8
5,131,266 + -0.2
5,131,399 + yoaF OKFHMN_26665 0.46 -0.7
5,131,566 + +0.4
5,131,566 + +0.4
5,131,567 - +1.8
5,131,567 - +0.1
5,131,947 - -0.1
5,132,011 + -2.0
5,132,307 + nimT OKFHMN_26675 0.29 -0.1
5,132,459 + nimT OKFHMN_26675 0.42 +0.5
5,132,675 - nimT OKFHMN_26675 0.60 +1.0
5,132,780 - nimT OKFHMN_26675 0.69 -0.2
5,132,833 + nimT OKFHMN_26675 0.74 -0.1

Or see this region's nucleotide sequence