Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26595

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttsaB and yeaY are separated by 39 nucleotidesyeaY and fadD are separated by 138 nucleotidesfadD and rnd are separated by 81 nucleotides OKFHMN_26585: tsaB - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 5,117,323 to 5,118,018 tsaB OKFHMN_26590: yeaY - Slp family lipoprotein YeaY, at 5,118,058 to 5,118,639 yeaY OKFHMN_26595: fadD - long-chain-fatty-acid--CoA ligase FadD, at 5,118,778 to 5,120,529 fadD OKFHMN_26605: rnd - ribonuclease D, at 5,120,611 to 5,121,726 rnd Position (kb) 5118 5119 5120 5121Strain fitness (log2 ratio) -3 -2 -1 0 1at 5117.979 kb on + strandat 5118.023 kb on + strandat 5118.208 kb on + strand, within yeaYat 5118.750 kb on + strandat 5118.832 kb on - strandat 5118.920 kb on + strandat 5118.924 kb on + strandat 5119.166 kb on - strand, within fadDat 5119.263 kb on + strand, within fadDat 5119.435 kb on + strand, within fadDat 5119.687 kb on - strand, within fadDat 5120.144 kb on + strand, within fadDat 5120.239 kb on + strand, within fadDat 5120.489 kb on + strandat 5120.584 kb on + strandat 5120.982 kb on + strand, within rndat 5121.049 kb on + strand, within rndat 5121.101 kb on + strand, within rndat 5121.346 kb on + strand, within rndat 5121.347 kb on - strand, within rndat 5121.348 kb on + strand, within rndat 5121.414 kb on + strand, within rnd

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,117,979 + +0.3
5,118,023 + -0.5
5,118,208 + yeaY OKFHMN_26590 0.26 -3.2
5,118,750 + -0.7
5,118,832 - -0.1
5,118,920 + -0.5
5,118,924 + +1.2
5,119,166 - fadD OKFHMN_26595 0.22 -0.1
5,119,263 + fadD OKFHMN_26595 0.28 -1.7
5,119,435 + fadD OKFHMN_26595 0.38 +1.0
5,119,687 - fadD OKFHMN_26595 0.52 -0.0
5,120,144 + fadD OKFHMN_26595 0.78 +0.8
5,120,239 + fadD OKFHMN_26595 0.83 -0.0
5,120,489 + -1.4
5,120,584 + +0.2
5,120,982 + rnd OKFHMN_26605 0.33 -1.6
5,121,049 + rnd OKFHMN_26605 0.39 -1.1
5,121,101 + rnd OKFHMN_26605 0.44 -2.6
5,121,346 + rnd OKFHMN_26605 0.66 +0.2
5,121,347 - rnd OKFHMN_26605 0.66 -0.8
5,121,348 + rnd OKFHMN_26605 0.66 -2.7
5,121,414 + rnd OKFHMN_26605 0.72 -1.9

Or see this region's nucleotide sequence