Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26190

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargS and yecM are separated by 215 nucleotidesyecM and cutC are separated by 13 nucleotides OKFHMN_26185: argS - arginine--tRNA ligase, at 5,046,694 to 5,048,427 argS OKFHMN_26190: yecM - VOC family protein, at 5,048,643 to 5,049,209 yecM OKFHMN_26195: cutC - copper homeostasis protein CutC, at 5,049,223 to 5,049,969 cutC Position (kb) 5048 5049 5050Strain fitness (log2 ratio) -2 -1 0 1 2at 5048.554 kb on - strandat 5048.713 kb on + strand, within yecMat 5048.713 kb on + strand, within yecMat 5048.713 kb on + strand, within yecMat 5048.852 kb on + strand, within yecMat 5048.924 kb on + strand, within yecMat 5048.981 kb on + strand, within yecMat 5049.211 kb on + strandat 5049.211 kb on + strandat 5049.211 kb on + strandat 5049.852 kb on + strand, within cutC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,048,554 - +2.4
5,048,713 + yecM OKFHMN_26190 0.12 -0.1
5,048,713 + yecM OKFHMN_26190 0.12 -0.0
5,048,713 + yecM OKFHMN_26190 0.12 +1.0
5,048,852 + yecM OKFHMN_26190 0.37 +0.3
5,048,924 + yecM OKFHMN_26190 0.50 +0.5
5,048,981 + yecM OKFHMN_26190 0.60 -2.0
5,049,211 + -0.1
5,049,211 + -2.0
5,049,211 + +0.1
5,049,852 + cutC OKFHMN_26195 0.84 +0.7

Or see this region's nucleotide sequence