Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26160

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcheB and cheY are separated by 14 nucleotidescheY and cheZ are separated by 10 nucleotidescheZ and flhB are separated by 201 nucleotides OKFHMN_26150: cheB - protein-glutamate methylesterase/protein glutamine deamidase, at 5,039,988 to 5,041,037 cheB OKFHMN_26155: cheY - chemotaxis regulatory protein CheY, at 5,041,052 to 5,041,441 cheY OKFHMN_26160: cheZ - protein phosphatase CheZ, at 5,041,452 to 5,042,096 cheZ OKFHMN_26165: flhB - flagellar biosynthesis protein FlhB, at 5,042,298 to 5,043,446 flhB Position (kb) 5041 5042 5043Strain fitness (log2 ratio) -1 0 1at 5040.509 kb on + strand, within cheBat 5040.557 kb on + strand, within cheBat 5040.558 kb on - strand, within cheBat 5040.664 kb on - strand, within cheBat 5040.766 kb on + strand, within cheBat 5040.806 kb on + strand, within cheBat 5040.985 kb on + strandat 5041.027 kb on + strandat 5041.027 kb on + strandat 5041.618 kb on - strand, within cheZat 5041.618 kb on - strand, within cheZat 5041.620 kb on + strand, within cheZat 5041.620 kb on + strand, within cheZat 5041.620 kb on + strand, within cheZat 5041.791 kb on - strand, within cheZat 5042.178 kb on + strandat 5042.179 kb on - strandat 5042.273 kb on + strandat 5042.429 kb on + strand, within flhBat 5043.014 kb on + strand, within flhB

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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5,040,509 + cheB OKFHMN_26150 0.50 +0.3
5,040,557 + cheB OKFHMN_26150 0.54 +0.3
5,040,558 - cheB OKFHMN_26150 0.54 -0.9
5,040,664 - cheB OKFHMN_26150 0.64 -1.1
5,040,766 + cheB OKFHMN_26150 0.74 +0.1
5,040,806 + cheB OKFHMN_26150 0.78 +0.4
5,040,985 + +1.5
5,041,027 + +0.6
5,041,027 + -0.2
5,041,618 - cheZ OKFHMN_26160 0.26 -1.2
5,041,618 - cheZ OKFHMN_26160 0.26 -0.8
5,041,620 + cheZ OKFHMN_26160 0.26 -0.2
5,041,620 + cheZ OKFHMN_26160 0.26 -0.9
5,041,620 + cheZ OKFHMN_26160 0.26 -0.5
5,041,791 - cheZ OKFHMN_26160 0.53 -0.8
5,042,178 + -0.7
5,042,179 - +0.2
5,042,273 + -0.4
5,042,429 + flhB OKFHMN_26165 0.11 +0.9
5,043,014 + flhB OKFHMN_26165 0.62 +0.5

Or see this region's nucleotide sequence