Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_26015 and tnp-IS3 overlap by 35 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and yecA are separated by 162 nucleotides yecA and tyrP are separated by 61 nucleotides
OKFHMN_26015: OKFHMN_26015 - AMP nucleosidase, at 5,016,223 to 5,016,306
_26015
OKFHMN_26020: tnp-IS3 - IS3 family transposase, at 5,016,272 to 5,017,159
tnp-IS3
OKFHMN_26025: tnp-IS3 - IS3 family transposase, at 5,017,159 to 5,017,485
tnp-IS3
OKFHMN_26030: yecA - UPF0149 family protein YecA, at 5,017,648 to 5,018,313
yecA
OKFHMN_26035: tyrP - tyrosine transporter TyrP, at 5,018,375 to 5,019,586
tyrP
Position (kb) 5017
5018 Strain fitness (log2 ratio) -2
-1
0
1 at 5016.262 kb on - strand, within OKFHMN_26015 at 5017.606 kb on + strand at 5017.708 kb on + strand at 5017.872 kb on + strand, within yecA at 5017.873 kb on - strand, within yecA at 5017.893 kb on + strand, within yecA at 5018.150 kb on + strand, within yecA at 5018.150 kb on + strand, within yecA at 5018.372 kb on + strand at 5018.373 kb on - strand at 5018.373 kb on - strand at 5018.435 kb on - strand at 5018.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 5,016,262 - OKFHMN_26015 0.46 -1.2 5,017,606 + +1.2 5,017,708 + -1.2 5,017,872 + yecA OKFHMN_26030 0.34 +0.7 5,017,873 - yecA OKFHMN_26030 0.34 -1.0 5,017,893 + yecA OKFHMN_26030 0.37 -2.5 5,018,150 + yecA OKFHMN_26030 0.75 -2.3 5,018,150 + yecA OKFHMN_26030 0.75 +0.6 5,018,372 + +0.3 5,018,373 - -0.1 5,018,373 - +1.4 5,018,435 - -0.4 5,018,435 - +0.4
Or see this region's nucleotide sequence