Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25820

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsdiA and yecF are separated by 67 nucleotidesyecF and uvrC are separated by 458 nucleotidesuvrC and uvrC overlap by 4 nucleotides OKFHMN_25810: sdiA - transcriptional regulator SdiA, at 4,990,002 to 4,990,724 sdiA OKFHMN_25815: yecF - DUF2594 domain-containing protein, at 4,990,792 to 4,991,016 yecF OKFHMN_25820: uvrC - excinuclease ABC subunit UvrC, at 4,991,475 to 4,992,131 uvrC OKFHMN_25825: uvrC - excinuclease ABC subunit UvrC, at 4,992,128 to 4,993,960 uvrC Position (kb) 4991 4992 4993Strain fitness (log2 ratio) -3 -2 -1 0 1at 4990.709 kb on + strandat 4990.889 kb on - strand, within yecFat 4990.889 kb on - strand, within yecFat 4991.010 kb on + strandat 4991.137 kb on + strandat 4991.149 kb on + strandat 4991.153 kb on - strandat 4991.290 kb on - strandat 4991.333 kb on + strandat 4991.543 kb on + strand, within uvrCat 4991.545 kb on + strand, within uvrCat 4991.594 kb on + strand, within uvrCat 4991.717 kb on + strand, within uvrCat 4991.740 kb on + strand, within uvrCat 4992.024 kb on + strand, within uvrCat 4992.035 kb on + strand, within uvrCat 4992.221 kb on + strandat 4992.222 kb on - strandat 4992.264 kb on - strandat 4992.330 kb on + strand, within uvrCat 4992.439 kb on + strand, within uvrCat 4992.509 kb on + strand, within uvrCat 4992.533 kb on + strand, within uvrCat 4992.633 kb on - strand, within uvrCat 4992.972 kb on - strand, within uvrCat 4993.037 kb on + strand, within uvrCat 4993.041 kb on + strand, within uvrC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,990,709 + +0.0
4,990,889 - yecF OKFHMN_25815 0.43 -0.6
4,990,889 - yecF OKFHMN_25815 0.43 +0.7
4,991,010 + -0.7
4,991,137 + +0.0
4,991,149 + -0.5
4,991,153 - -0.4
4,991,290 - +0.0
4,991,333 + +0.2
4,991,543 + uvrC OKFHMN_25820 0.10 +0.3
4,991,545 + uvrC OKFHMN_25820 0.11 +0.3
4,991,594 + uvrC OKFHMN_25820 0.18 -1.5
4,991,717 + uvrC OKFHMN_25820 0.37 -0.3
4,991,740 + uvrC OKFHMN_25820 0.40 +0.0
4,992,024 + uvrC OKFHMN_25820 0.84 -0.5
4,992,035 + uvrC OKFHMN_25820 0.85 -3.4
4,992,221 + +0.6
4,992,222 - +1.5
4,992,264 - -0.0
4,992,330 + uvrC OKFHMN_25825 0.11 -1.4
4,992,439 + uvrC OKFHMN_25825 0.17 +1.0
4,992,509 + uvrC OKFHMN_25825 0.21 -0.7
4,992,533 + uvrC OKFHMN_25825 0.22 +0.7
4,992,633 - uvrC OKFHMN_25825 0.28 +0.2
4,992,972 - uvrC OKFHMN_25825 0.46 -0.3
4,993,037 + uvrC OKFHMN_25825 0.50 +0.4
4,993,041 + uvrC OKFHMN_25825 0.50 -3.3

Or see this region's nucleotide sequence