Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedP and yodD are separated by 297 nucleotides yodD and dsrB are separated by 162 nucleotides dsrB and rcsA are separated by 43 nucleotides rcsA and fliR are separated by 284 nucleotides
OKFHMN_25630: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 4,960,257 to 4,961,072
yedP
OKFHMN_25640: yodD - YodD family peroxide/acid resistance protein, at 4,961,370 to 4,961,597
yodD
OKFHMN_25645: dsrB - protein DsrB, at 4,961,760 to 4,961,948
dsrB
OKFHMN_25650: rcsA - transcriptional regulator RcsA, at 4,961,992 to 4,962,615
rcsA
OKFHMN_25655: fliR - flagellar type III secretion system protein FliR, at 4,962,900 to 4,963,685
fliR
Position (kb) 4961
4962
4963 Strain fitness (log2 ratio) -1
0
1 at 4961.003 kb on - strand at 4961.007 kb on - strand at 4961.442 kb on - strand, within yodD at 4961.662 kb on - strand at 4961.668 kb on - strand at 4961.668 kb on - strand at 4961.729 kb on + strand at 4962.588 kb on + strand at 4962.923 kb on + strand at 4963.322 kb on + strand, within fliR
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,961,003 - +1.3 4,961,007 - +0.3 4,961,442 - yodD OKFHMN_25640 0.32 +0.4 4,961,662 - -0.5 4,961,668 - -0.3 4,961,668 - -0.7 4,961,729 + -1.3 4,962,588 + +0.8 4,962,923 + -0.6 4,963,322 + fliR OKFHMN_25655 0.54 -0.4
Or see this region's nucleotide sequence