Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25580

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthchA and OKFHMN_25580 are separated by 591 nucleotidesOKFHMN_25580 and OKFHMN_25585 overlap by 34 nucleotides OKFHMN_25575: hchA - protein deglycase HchA, at 4,949,904 to 4,950,755 hchA OKFHMN_25580: OKFHMN_25580 - Outer membrane protein, at 4,951,347 to 4,951,922 _25580 OKFHMN_25585: OKFHMN_25585 - Putative outer membrane protein, at 4,951,889 to 4,952,533 _25585 Position (kb) 4951 4952Strain fitness (log2 ratio) -2 -1 0 1 2at 4951.044 kb on + strandat 4951.183 kb on + strandat 4951.348 kb on + strandat 4951.560 kb on - strand, within OKFHMN_25580at 4951.564 kb on - strand, within OKFHMN_25580at 4951.718 kb on - strand, within OKFHMN_25580at 4951.721 kb on + strand, within OKFHMN_25580at 4951.721 kb on + strand, within OKFHMN_25580at 4951.722 kb on - strand, within OKFHMN_25580at 4951.722 kb on - strand, within OKFHMN_25580at 4951.722 kb on - strand, within OKFHMN_25580at 4951.722 kb on - strand, within OKFHMN_25580at 4951.827 kb on - strand, within OKFHMN_25580at 4951.891 kb on - strandat 4951.923 kb on - strandat 4952.082 kb on - strand, within OKFHMN_25585at 4952.125 kb on - strand, within OKFHMN_25585at 4952.175 kb on + strand, within OKFHMN_25585at 4952.176 kb on - strand, within OKFHMN_25585at 4952.178 kb on - strand, within OKFHMN_25585at 4952.188 kb on - strand, within OKFHMN_25585at 4952.407 kb on - strand, within OKFHMN_25585

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,951,044 + +0.2
4,951,183 + -0.3
4,951,348 + +0.6
4,951,560 - OKFHMN_25580 0.37 +0.5
4,951,564 - OKFHMN_25580 0.38 +0.7
4,951,718 - OKFHMN_25580 0.64 -0.5
4,951,721 + OKFHMN_25580 0.65 -0.1
4,951,721 + OKFHMN_25580 0.65 +2.3
4,951,722 - OKFHMN_25580 0.65 +0.2
4,951,722 - OKFHMN_25580 0.65 +2.1
4,951,722 - OKFHMN_25580 0.65 +0.3
4,951,722 - OKFHMN_25580 0.65 +0.1
4,951,827 - OKFHMN_25580 0.83 +0.1
4,951,891 - -2.4
4,951,923 - +0.4
4,952,082 - OKFHMN_25585 0.30 +1.1
4,952,125 - OKFHMN_25585 0.37 -0.2
4,952,175 + OKFHMN_25585 0.44 +0.5
4,952,176 - OKFHMN_25585 0.44 +0.6
4,952,178 - OKFHMN_25585 0.45 -0.3
4,952,188 - OKFHMN_25585 0.46 -1.4
4,952,407 - OKFHMN_25585 0.80 +0.3

Or see this region's nucleotide sequence