Strain Fitness in Escherichia coli ECRC100 around OKFHMN_24510

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisB and hisC overlap by 1 nucleotideshisC and hisD overlap by 4 nucleotides OKFHMN_24505: hisB - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 4,789,194 to 4,790,261 hisB OKFHMN_24510: hisC - histidinol-phosphate transaminase, at 4,790,261 to 4,791,331 hisC OKFHMN_24515: hisD - Histidinol dehydrogenase, at 4,791,328 to 4,792,632 hisD Position (kb) 4790 4791 4792Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4789.285 kb on - strandat 4789.304 kb on + strand, within hisBat 4789.343 kb on - strand, within hisBat 4789.534 kb on - strand, within hisBat 4789.742 kb on + strand, within hisBat 4789.742 kb on + strand, within hisBat 4789.885 kb on + strand, within hisBat 4790.026 kb on - strand, within hisBat 4790.436 kb on + strand, within hisCat 4790.546 kb on - strand, within hisCat 4790.657 kb on - strand, within hisCat 4790.772 kb on + strand, within hisCat 4790.773 kb on - strand, within hisCat 4790.995 kb on - strand, within hisCat 4790.995 kb on - strand, within hisCat 4791.191 kb on - strand, within hisCat 4791.273 kb on + strandat 4791.316 kb on + strandat 4791.590 kb on - strand, within hisDat 4791.766 kb on + strand, within hisDat 4792.244 kb on + strand, within hisDat 4792.306 kb on + strand, within hisDat 4792.312 kb on + strand, within hisD

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,789,285 - -3.7
4,789,304 + hisB OKFHMN_24505 0.10 -1.3
4,789,343 - hisB OKFHMN_24505 0.14 -3.8
4,789,534 - hisB OKFHMN_24505 0.32 -0.5
4,789,742 + hisB OKFHMN_24505 0.51 -4.0
4,789,742 + hisB OKFHMN_24505 0.51 -3.5
4,789,885 + hisB OKFHMN_24505 0.65 -5.1
4,790,026 - hisB OKFHMN_24505 0.78 -2.4
4,790,436 + hisC OKFHMN_24510 0.16 -2.9
4,790,546 - hisC OKFHMN_24510 0.27 -4.4
4,790,657 - hisC OKFHMN_24510 0.37 -2.0
4,790,772 + hisC OKFHMN_24510 0.48 -5.6
4,790,773 - hisC OKFHMN_24510 0.48 -1.5
4,790,995 - hisC OKFHMN_24510 0.69 -0.5
4,790,995 - hisC OKFHMN_24510 0.69 -1.4
4,791,191 - hisC OKFHMN_24510 0.87 -4.3
4,791,273 + -4.0
4,791,316 + -2.9
4,791,590 - hisD OKFHMN_24515 0.20 -2.6
4,791,766 + hisD OKFHMN_24515 0.34 -4.9
4,792,244 + hisD OKFHMN_24515 0.70 -2.9
4,792,306 + hisD OKFHMN_24515 0.75 -2.0
4,792,312 + hisD OKFHMN_24515 0.75 -3.6

Or see this region's nucleotide sequence