Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23520

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeiG and folE are separated by 257 nucleotidesfolE and yeiB are separated by 16 nucleotidesyeiB and galS are separated by 141 nucleotides OKFHMN_23510: yeiG - S-formylglutathione hydrolase, at 4,593,618 to 4,594,454 yeiG OKFHMN_23515: folE - GTP cyclohydrolase I FolE, at 4,594,712 to 4,595,380 folE OKFHMN_23520: yeiB - Uncharacterized protein YeiB, at 4,595,397 to 4,596,554 yeiB OKFHMN_23525: galS - HTH-type transcriptional regulator GalS, at 4,596,696 to 4,597,736 galS Position (kb) 4595 4596 4597Strain fitness (log2 ratio) -2 -1 0 1at 4594.656 kb on + strandat 4595.384 kb on - strandat 4595.455 kb on + strandat 4595.499 kb on - strandat 4595.685 kb on - strand, within yeiBat 4595.792 kb on + strand, within yeiBat 4596.191 kb on - strand, within yeiBat 4596.282 kb on - strand, within yeiBat 4596.330 kb on + strand, within yeiBat 4596.334 kb on + strand, within yeiBat 4596.540 kb on - strandat 4596.628 kb on + strandat 4596.628 kb on + strandat 4596.688 kb on + strandat 4596.966 kb on + strand, within galSat 4596.966 kb on + strand, within galSat 4596.988 kb on - strand, within galSat 4597.044 kb on - strand, within galSat 4597.123 kb on + strand, within galSat 4597.278 kb on - strand, within galSat 4597.426 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.463 kb on - strand, within galSat 4597.517 kb on + strand, within galS

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,594,656 + -0.1
4,595,384 - -1.5
4,595,455 + +0.5
4,595,499 - -0.1
4,595,685 - yeiB OKFHMN_23520 0.25 -2.3
4,595,792 + yeiB OKFHMN_23520 0.34 -0.4
4,596,191 - yeiB OKFHMN_23520 0.69 -0.5
4,596,282 - yeiB OKFHMN_23520 0.76 -1.2
4,596,330 + yeiB OKFHMN_23520 0.81 -1.2
4,596,334 + yeiB OKFHMN_23520 0.81 +0.7
4,596,540 - -2.0
4,596,628 + +0.8
4,596,628 + +0.2
4,596,688 + +0.1
4,596,966 + galS OKFHMN_23525 0.26 +0.4
4,596,966 + galS OKFHMN_23525 0.26 +1.5
4,596,988 - galS OKFHMN_23525 0.28 +0.3
4,597,044 - galS OKFHMN_23525 0.33 -0.4
4,597,123 + galS OKFHMN_23525 0.41 +0.8
4,597,278 - galS OKFHMN_23525 0.56 -0.8
4,597,426 - galS OKFHMN_23525 0.70 -0.2
4,597,463 - galS OKFHMN_23525 0.74 +1.3
4,597,463 - galS OKFHMN_23525 0.74 -0.7
4,597,463 - galS OKFHMN_23525 0.74 -0.1
4,597,517 + galS OKFHMN_23525 0.79 +0.8

Or see this region's nucleotide sequence