Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23080

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_23075 and OKFHMN_23080 are separated by 178 nucleotidesOKFHMN_23080 and lysR are separated by 153 nucleotides OKFHMN_23075: OKFHMN_23075 - hypothetical protein, at 4,494,274 to 4,495,344 _23075 OKFHMN_23080: OKFHMN_23080 - hypothetical protein, at 4,495,523 to 4,495,654 _23080 OKFHMN_23085: lysR - transcriptional regulator, at 4,495,808 to 4,496,686 lysR Position (kb) 4495 4496Strain fitness (log2 ratio) -1 0 1 2at 4495.171 kb on + strand, within OKFHMN_23075at 4495.203 kb on + strand, within OKFHMN_23075at 4495.204 kb on - strand, within OKFHMN_23075at 4495.483 kb on + strandat 4495.521 kb on + strandat 4495.738 kb on - strandat 4495.750 kb on - strandat 4495.750 kb on - strandat 4495.755 kb on + strandat 4495.804 kb on + strandat 4495.968 kb on - strand, within lysRat 4496.107 kb on + strand, within lysRat 4496.549 kb on - strand, within lysR

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,495,171 + OKFHMN_23075 0.84 +0.8
4,495,203 + OKFHMN_23075 0.87 +0.6
4,495,204 - OKFHMN_23075 0.87 -0.0
4,495,483 + +0.7
4,495,521 + -1.6
4,495,738 - -0.1
4,495,750 - +0.8
4,495,750 - -0.7
4,495,755 + -0.7
4,495,804 + -0.3
4,495,968 - lysR OKFHMN_23085 0.18 +1.8
4,496,107 + lysR OKFHMN_23085 0.34 -0.9
4,496,549 - lysR OKFHMN_23085 0.84 -1.2

Or see this region's nucleotide sequence