Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22800

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntackA and yfbV are separated by 337 nucleotidesyfbV and yfbU are separated by 82 nucleotidesyfbU and hxpA are separated by 10 nucleotides OKFHMN_22795: ackA - acetate kinase, at 4,433,827 to 4,435,029 ackA OKFHMN_22800: yfbV - UPF0208 membrane protein YfbV, at 4,435,367 to 4,435,822 yfbV OKFHMN_22805: yfbU - YfbU family protein, at 4,435,905 to 4,436,399 yfbU OKFHMN_22810: hxpA - hexitol phosphatase HxpA, at 4,436,410 to 4,437,060 hxpA Position (kb) 4435 4436Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4434.468 kb on - strand, within ackAat 4434.468 kb on - strand, within ackAat 4434.814 kb on - strand, within ackAat 4435.078 kb on - strandat 4435.113 kb on + strandat 4435.199 kb on + strandat 4435.200 kb on - strandat 4435.200 kb on - strandat 4435.204 kb on + strandat 4435.205 kb on - strandat 4435.205 kb on - strandat 4435.205 kb on - strandat 4435.205 kb on - strandat 4435.207 kb on - strandat 4435.229 kb on + strandat 4435.230 kb on - strandat 4435.230 kb on - strandat 4435.230 kb on - strandat 4435.234 kb on - strandat 4435.236 kb on + strandat 4435.236 kb on + strandat 4435.237 kb on - strandat 4435.237 kb on - strandat 4435.237 kb on - strandat 4435.241 kb on - strandat 4435.241 kb on - strandat 4435.270 kb on + strandat 4435.271 kb on - strandat 4435.344 kb on + strandat 4435.346 kb on + strandat 4435.537 kb on + strand, within yfbVat 4435.762 kb on - strand, within yfbVat 4435.836 kb on - strandat 4435.841 kb on + strandat 4435.842 kb on - strandat 4435.843 kb on + strandat 4435.843 kb on + strandat 4435.844 kb on - strandat 4435.892 kb on - strandat 4435.931 kb on + strandat 4435.947 kb on + strandat 4435.961 kb on + strand, within yfbUat 4435.961 kb on + strand, within yfbUat 4436.030 kb on - strand, within yfbUat 4436.109 kb on + strand, within yfbUat 4436.135 kb on + strand, within yfbUat 4436.211 kb on + strand, within yfbUat 4436.253 kb on + strand, within yfbUat 4436.254 kb on - strand, within yfbUat 4436.327 kb on + strand, within yfbUat 4436.327 kb on + strand, within yfbUat 4436.328 kb on - strand, within yfbUat 4436.328 kb on - strand, within yfbUat 4436.328 kb on - strand, within yfbUat 4436.652 kb on + strand, within hxpAat 4436.653 kb on - strand, within hxpA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,434,468 - ackA OKFHMN_22795 0.53 -1.3
4,434,468 - ackA OKFHMN_22795 0.53 +1.3
4,434,814 - ackA OKFHMN_22795 0.82 -0.9
4,435,078 - +0.1
4,435,113 + -1.9
4,435,199 + -0.1
4,435,200 - +0.7
4,435,200 - +0.9
4,435,204 + +0.3
4,435,205 - +0.8
4,435,205 - -0.4
4,435,205 - +0.1
4,435,205 - +1.1
4,435,207 - +0.7
4,435,229 + -2.3
4,435,230 - -0.3
4,435,230 - +0.3
4,435,230 - -0.9
4,435,234 - +0.4
4,435,236 + +0.2
4,435,236 + +0.4
4,435,237 - -0.4
4,435,237 - +0.1
4,435,237 - +0.2
4,435,241 - +0.2
4,435,241 - -0.5
4,435,270 + +0.4
4,435,271 - -0.6
4,435,344 + +1.5
4,435,346 + +0.0
4,435,537 + yfbV OKFHMN_22800 0.37 +0.7
4,435,762 - yfbV OKFHMN_22800 0.87 -1.4
4,435,836 - -0.2
4,435,841 + +0.1
4,435,842 - -0.3
4,435,843 + -0.7
4,435,843 + -0.1
4,435,844 - +0.4
4,435,892 - -2.4
4,435,931 + +0.9
4,435,947 + -0.3
4,435,961 + yfbU OKFHMN_22805 0.11 -0.3
4,435,961 + yfbU OKFHMN_22805 0.11 -0.3
4,436,030 - yfbU OKFHMN_22805 0.25 -1.3
4,436,109 + yfbU OKFHMN_22805 0.41 +2.9
4,436,135 + yfbU OKFHMN_22805 0.46 +0.3
4,436,211 + yfbU OKFHMN_22805 0.62 -1.5
4,436,253 + yfbU OKFHMN_22805 0.70 +0.3
4,436,254 - yfbU OKFHMN_22805 0.71 -0.2
4,436,327 + yfbU OKFHMN_22805 0.85 -0.1
4,436,327 + yfbU OKFHMN_22805 0.85 -0.6
4,436,328 - yfbU OKFHMN_22805 0.85 -0.9
4,436,328 - yfbU OKFHMN_22805 0.85 -1.0
4,436,328 - yfbU OKFHMN_22805 0.85 +0.1
4,436,652 + hxpA OKFHMN_22810 0.37 +0.1
4,436,653 - hxpA OKFHMN_22810 0.37 -1.1

Or see this region's nucleotide sequence