Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22785

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfcE and yfcD are separated by 57 nucleotidesyfcD and yfcC are separated by 32 nucleotidesyfcC and pta are separated by 231 nucleotides OKFHMN_22775: yfcE - phosphodiesterase, at 4,428,714 to 4,429,265 yfcE OKFHMN_22780: yfcD - NUDIX hydrolase YfcD, at 4,429,323 to 4,429,865 yfcD OKFHMN_22785: yfcC - putative basic amino acid antiporter YfcC, at 4,429,898 to 4,431,376 yfcC OKFHMN_22790: pta - phosphate acetyltransferase, at 4,431,608 to 4,433,752 pta Position (kb) 4429 4430 4431 4432Strain fitness (log2 ratio) -2 -1 0 1 2at 4428.905 kb on + strand, within yfcEat 4428.905 kb on + strand, within yfcEat 4428.905 kb on + strand, within yfcEat 4428.905 kb on + strand, within yfcEat 4428.905 kb on + strand, within yfcEat 4428.906 kb on - strand, within yfcEat 4428.991 kb on + strand, within yfcEat 4428.991 kb on + strand, within yfcEat 4428.991 kb on + strand, within yfcEat 4428.991 kb on + strand, within yfcEat 4429.092 kb on - strand, within yfcEat 4429.204 kb on + strand, within yfcEat 4429.204 kb on + strand, within yfcEat 4429.205 kb on - strand, within yfcEat 4429.208 kb on + strand, within yfcEat 4429.208 kb on + strand, within yfcEat 4429.213 kb on + strandat 4429.362 kb on - strandat 4429.443 kb on + strand, within yfcDat 4429.444 kb on - strand, within yfcDat 4429.444 kb on - strand, within yfcDat 4429.490 kb on + strand, within yfcDat 4429.510 kb on + strand, within yfcDat 4429.522 kb on + strand, within yfcDat 4429.522 kb on + strand, within yfcDat 4429.899 kb on + strandat 4429.945 kb on + strandat 4430.135 kb on + strand, within yfcCat 4430.209 kb on + strand, within yfcCat 4430.273 kb on - strand, within yfcCat 4430.276 kb on + strand, within yfcCat 4430.402 kb on - strand, within yfcCat 4430.830 kb on - strand, within yfcCat 4430.830 kb on - strand, within yfcCat 4430.830 kb on - strand, within yfcCat 4430.830 kb on - strand, within yfcCat 4430.851 kb on + strand, within yfcCat 4430.852 kb on - strand, within yfcCat 4430.927 kb on + strand, within yfcCat 4431.427 kb on + strandat 4431.456 kb on + strandat 4431.559 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,428,905 + yfcE OKFHMN_22775 0.35 +1.3
4,428,905 + yfcE OKFHMN_22775 0.35 -0.1
4,428,905 + yfcE OKFHMN_22775 0.35 -0.7
4,428,905 + yfcE OKFHMN_22775 0.35 -0.0
4,428,905 + yfcE OKFHMN_22775 0.35 -1.1
4,428,906 - yfcE OKFHMN_22775 0.35 -0.4
4,428,991 + yfcE OKFHMN_22775 0.50 +0.1
4,428,991 + yfcE OKFHMN_22775 0.50 +0.6
4,428,991 + yfcE OKFHMN_22775 0.50 +1.3
4,428,991 + yfcE OKFHMN_22775 0.50 -0.4
4,429,092 - yfcE OKFHMN_22775 0.68 -0.8
4,429,204 + yfcE OKFHMN_22775 0.89 -2.6
4,429,204 + yfcE OKFHMN_22775 0.89 -0.4
4,429,205 - yfcE OKFHMN_22775 0.89 +1.9
4,429,208 + yfcE OKFHMN_22775 0.89 -0.2
4,429,208 + yfcE OKFHMN_22775 0.89 +0.2
4,429,213 + +0.3
4,429,362 - -1.4
4,429,443 + yfcD OKFHMN_22780 0.22 -0.2
4,429,444 - yfcD OKFHMN_22780 0.22 +1.4
4,429,444 - yfcD OKFHMN_22780 0.22 -0.4
4,429,490 + yfcD OKFHMN_22780 0.31 -0.7
4,429,510 + yfcD OKFHMN_22780 0.34 -0.5
4,429,522 + yfcD OKFHMN_22780 0.37 -0.3
4,429,522 + yfcD OKFHMN_22780 0.37 -0.5
4,429,899 + -0.1
4,429,945 + +0.1
4,430,135 + yfcC OKFHMN_22785 0.16 +0.6
4,430,209 + yfcC OKFHMN_22785 0.21 +0.0
4,430,273 - yfcC OKFHMN_22785 0.25 +0.5
4,430,276 + yfcC OKFHMN_22785 0.26 +0.4
4,430,402 - yfcC OKFHMN_22785 0.34 -0.3
4,430,830 - yfcC OKFHMN_22785 0.63 -0.7
4,430,830 - yfcC OKFHMN_22785 0.63 +0.2
4,430,830 - yfcC OKFHMN_22785 0.63 +0.5
4,430,830 - yfcC OKFHMN_22785 0.63 +0.5
4,430,851 + yfcC OKFHMN_22785 0.64 -1.4
4,430,852 - yfcC OKFHMN_22785 0.65 +0.6
4,430,927 + yfcC OKFHMN_22785 0.70 +0.2
4,431,427 + -0.2
4,431,456 + -0.4
4,431,559 + +0.1

Or see this region's nucleotide sequence