Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfcE and yfcD are separated by 57 nucleotides yfcD and yfcC are separated by 32 nucleotides yfcC and pta are separated by 231 nucleotides
OKFHMN_22775: yfcE - phosphodiesterase, at 4,428,714 to 4,429,265
yfcE
OKFHMN_22780: yfcD - NUDIX hydrolase YfcD, at 4,429,323 to 4,429,865
yfcD
OKFHMN_22785: yfcC - putative basic amino acid antiporter YfcC, at 4,429,898 to 4,431,376
yfcC
OKFHMN_22790: pta - phosphate acetyltransferase, at 4,431,608 to 4,433,752
pta
Position (kb)
4429
4430
4431
4432 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4428.905 kb on + strand, within yfcE at 4428.905 kb on + strand, within yfcE at 4428.905 kb on + strand, within yfcE at 4428.905 kb on + strand, within yfcE at 4428.905 kb on + strand, within yfcE at 4428.906 kb on - strand, within yfcE at 4428.991 kb on + strand, within yfcE at 4428.991 kb on + strand, within yfcE at 4428.991 kb on + strand, within yfcE at 4428.991 kb on + strand, within yfcE at 4429.092 kb on - strand, within yfcE at 4429.204 kb on + strand, within yfcE at 4429.204 kb on + strand, within yfcE at 4429.205 kb on - strand, within yfcE at 4429.208 kb on + strand, within yfcE at 4429.208 kb on + strand, within yfcE at 4429.213 kb on + strand at 4429.362 kb on - strand at 4429.443 kb on + strand, within yfcD at 4429.444 kb on - strand, within yfcD at 4429.444 kb on - strand, within yfcD at 4429.490 kb on + strand, within yfcD at 4429.510 kb on + strand, within yfcD at 4429.522 kb on + strand, within yfcD at 4429.522 kb on + strand, within yfcD at 4429.899 kb on + strand at 4429.945 kb on + strand at 4430.135 kb on + strand, within yfcC at 4430.209 kb on + strand, within yfcC at 4430.273 kb on - strand, within yfcC at 4430.276 kb on + strand, within yfcC at 4430.402 kb on - strand, within yfcC at 4430.830 kb on - strand, within yfcC at 4430.830 kb on - strand, within yfcC at 4430.830 kb on - strand, within yfcC at 4430.830 kb on - strand, within yfcC at 4430.851 kb on + strand, within yfcC at 4430.852 kb on - strand, within yfcC at 4430.927 kb on + strand, within yfcC at 4431.427 kb on + strand at 4431.456 kb on + strand at 4431.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,428,905 + yfcE OKFHMN_22775 0.35 +1.3 4,428,905 + yfcE OKFHMN_22775 0.35 -0.1 4,428,905 + yfcE OKFHMN_22775 0.35 -0.7 4,428,905 + yfcE OKFHMN_22775 0.35 -0.0 4,428,905 + yfcE OKFHMN_22775 0.35 -1.1 4,428,906 - yfcE OKFHMN_22775 0.35 -0.4 4,428,991 + yfcE OKFHMN_22775 0.50 +0.1 4,428,991 + yfcE OKFHMN_22775 0.50 +0.6 4,428,991 + yfcE OKFHMN_22775 0.50 +1.3 4,428,991 + yfcE OKFHMN_22775 0.50 -0.4 4,429,092 - yfcE OKFHMN_22775 0.68 -0.8 4,429,204 + yfcE OKFHMN_22775 0.89 -2.6 4,429,204 + yfcE OKFHMN_22775 0.89 -0.4 4,429,205 - yfcE OKFHMN_22775 0.89 +1.9 4,429,208 + yfcE OKFHMN_22775 0.89 -0.2 4,429,208 + yfcE OKFHMN_22775 0.89 +0.2 4,429,213 + +0.3 4,429,362 - -1.4 4,429,443 + yfcD OKFHMN_22780 0.22 -0.2 4,429,444 - yfcD OKFHMN_22780 0.22 +1.4 4,429,444 - yfcD OKFHMN_22780 0.22 -0.4 4,429,490 + yfcD OKFHMN_22780 0.31 -0.7 4,429,510 + yfcD OKFHMN_22780 0.34 -0.5 4,429,522 + yfcD OKFHMN_22780 0.37 -0.3 4,429,522 + yfcD OKFHMN_22780 0.37 -0.5 4,429,899 + -0.1 4,429,945 + +0.1 4,430,135 + yfcC OKFHMN_22785 0.16 +0.6 4,430,209 + yfcC OKFHMN_22785 0.21 +0.0 4,430,273 - yfcC OKFHMN_22785 0.25 +0.5 4,430,276 + yfcC OKFHMN_22785 0.26 +0.4 4,430,402 - yfcC OKFHMN_22785 0.34 -0.3 4,430,830 - yfcC OKFHMN_22785 0.63 -0.7 4,430,830 - yfcC OKFHMN_22785 0.63 +0.2 4,430,830 - yfcC OKFHMN_22785 0.63 +0.5 4,430,830 - yfcC OKFHMN_22785 0.63 +0.5 4,430,851 + yfcC OKFHMN_22785 0.64 -1.4 4,430,852 - yfcC OKFHMN_22785 0.65 +0.6 4,430,927 + yfcC OKFHMN_22785 0.70 +0.2 4,431,427 + -0.2 4,431,456 + -0.4 4,431,559 + +0.1
Or see this region's nucleotide sequence