Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cvpA and purF are separated by 36 nucleotides purF and ubiX are separated by 94 nucleotides ubiX and argT are separated by 265 nucleotides
OKFHMN_22710: cvpA - colicin V production protein, at 4,417,736 to 4,418,224
cvpA
OKFHMN_22715: purF - amidophosphoribosyltransferase, at 4,418,261 to 4,419,778
purF
OKFHMN_22720: ubiX - flavin prenyltransferase UbiX, at 4,419,873 to 4,420,442
ubiX
OKFHMN_22725: argT - lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT, at 4,420,708 to 4,421,490
argT
Position (kb) 4418
4419
4420 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4417.265 kb on + strand at 4417.429 kb on + strand at 4417.440 kb on - strand at 4417.448 kb on - strand at 4417.735 kb on + strand at 4417.751 kb on + strand at 4417.865 kb on + strand, within cvpA at 4417.869 kb on - strand, within cvpA at 4417.874 kb on + strand, within cvpA at 4417.874 kb on + strand, within cvpA at 4417.874 kb on + strand, within cvpA at 4417.986 kb on + strand, within cvpA at 4418.080 kb on + strand, within cvpA at 4418.080 kb on + strand, within cvpA at 4418.164 kb on + strand, within cvpA at 4418.222 kb on + strand at 4418.244 kb on - strand at 4418.260 kb on + strand at 4418.260 kb on + strand at 4418.261 kb on - strand at 4418.370 kb on + strand at 4418.370 kb on + strand at 4418.370 kb on + strand at 4418.371 kb on - strand at 4418.380 kb on + strand at 4418.462 kb on - strand, within purF at 4418.659 kb on + strand, within purF at 4418.660 kb on - strand, within purF at 4418.660 kb on - strand, within purF at 4418.660 kb on - strand, within purF at 4418.662 kb on + strand, within purF at 4418.874 kb on - strand, within purF at 4418.874 kb on - strand, within purF at 4418.955 kb on - strand, within purF at 4419.033 kb on + strand, within purF at 4419.033 kb on + strand, within purF at 4419.033 kb on + strand, within purF at 4419.033 kb on + strand, within purF at 4419.035 kb on + strand, within purF at 4419.036 kb on - strand, within purF at 4419.036 kb on - strand, within purF at 4419.292 kb on + strand, within purF at 4419.656 kb on + strand at 4419.705 kb on + strand at 4419.706 kb on - strand at 4419.766 kb on + strand at 4419.869 kb on - strand at 4420.441 kb on - strand at 4420.550 kb on - strand at 4420.591 kb on - strand at 4420.595 kb on - strand at 4420.608 kb on - strand at 4420.678 kb on - strand at 4420.707 kb on + strand at 4420.768 kb on + strand at 4420.768 kb on + strand at 4420.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,417,265 + +0.7 4,417,429 + -0.3 4,417,440 - +0.3 4,417,448 - -0.1 4,417,735 + -0.7 4,417,751 + -0.6 4,417,865 + cvpA OKFHMN_22710 0.26 -1.1 4,417,869 - cvpA OKFHMN_22710 0.27 -1.1 4,417,874 + cvpA OKFHMN_22710 0.28 +0.2 4,417,874 + cvpA OKFHMN_22710 0.28 -1.2 4,417,874 + cvpA OKFHMN_22710 0.28 -0.9 4,417,986 + cvpA OKFHMN_22710 0.51 -2.2 4,418,080 + cvpA OKFHMN_22710 0.70 -4.2 4,418,080 + cvpA OKFHMN_22710 0.70 -0.2 4,418,164 + cvpA OKFHMN_22710 0.88 -0.9 4,418,222 + +0.0 4,418,244 - -0.5 4,418,260 + -1.9 4,418,260 + -2.0 4,418,261 - -1.9 4,418,370 + -1.7 4,418,370 + -1.9 4,418,370 + -1.1 4,418,371 - -0.1 4,418,380 + -2.0 4,418,462 - purF OKFHMN_22715 0.13 -2.6 4,418,659 + purF OKFHMN_22715 0.26 -2.6 4,418,660 - purF OKFHMN_22715 0.26 -2.4 4,418,660 - purF OKFHMN_22715 0.26 -2.9 4,418,660 - purF OKFHMN_22715 0.26 -3.8 4,418,662 + purF OKFHMN_22715 0.26 -3.0 4,418,874 - purF OKFHMN_22715 0.40 -3.1 4,418,874 - purF OKFHMN_22715 0.40 -0.8 4,418,955 - purF OKFHMN_22715 0.46 -1.7 4,419,033 + purF OKFHMN_22715 0.51 -2.3 4,419,033 + purF OKFHMN_22715 0.51 -1.9 4,419,033 + purF OKFHMN_22715 0.51 +0.9 4,419,033 + purF OKFHMN_22715 0.51 -4.0 4,419,035 + purF OKFHMN_22715 0.51 -2.6 4,419,036 - purF OKFHMN_22715 0.51 -2.3 4,419,036 - purF OKFHMN_22715 0.51 -4.1 4,419,292 + purF OKFHMN_22715 0.68 -1.9 4,419,656 + -1.4 4,419,705 + -1.1 4,419,706 - -1.2 4,419,766 + -0.1 4,419,869 - +0.1 4,420,441 - -0.3 4,420,550 - +0.7 4,420,591 - -0.7 4,420,595 - +0.3 4,420,608 - +1.1 4,420,678 - +0.1 4,420,707 + -0.7 4,420,768 + -1.9 4,420,768 + -0.2 4,420,769 - -0.7
Or see this region's nucleotide sequence