Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt intS and Arg_trna are separated by 161 nucleotides Arg_trna and yfdC are separated by 75 nucleotides
OKFHMN_22520: intS - prophage integrase IntS, at 4,380,278 to 4,381,435
intS
OKFHMN_22525: Arg_trna - tRNA-Arg(cct), at 4,381,597 to 4,381,671
_trna
OKFHMN_22530: yfdC - Inner membrane protein YfdC, at 4,381,747 to 4,382,679
yfdC
Position (kb) 4381
4382 Strain fitness (log2 ratio) -1
0
1
2 at 4380.738 kb on - strand, within intS at 4380.781 kb on + strand, within intS at 4380.899 kb on - strand, within intS at 4380.905 kb on - strand, within intS at 4381.126 kb on + strand, within intS at 4381.127 kb on - strand, within intS at 4381.240 kb on + strand, within intS at 4381.240 kb on + strand, within intS at 4381.328 kb on + strand at 4381.344 kb on - strand at 4381.353 kb on + strand at 4381.353 kb on + strand at 4381.354 kb on - strand at 4381.369 kb on + strand at 4381.370 kb on - strand at 4381.649 kb on + strand, within Arg_trna at 4381.652 kb on - strand, within Arg_trna at 4381.652 kb on - strand, within Arg_trna at 4381.660 kb on - strand, within Arg_trna at 4381.664 kb on - strand at 4381.685 kb on + strand at 4381.685 kb on + strand at 4381.686 kb on - strand at 4381.714 kb on - strand at 4381.869 kb on + strand, within yfdC at 4381.870 kb on - strand, within yfdC at 4381.945 kb on - strand, within yfdC at 4382.031 kb on + strand, within yfdC at 4382.032 kb on - strand, within yfdC at 4382.075 kb on - strand, within yfdC at 4382.075 kb on - strand, within yfdC at 4382.199 kb on + strand, within yfdC at 4382.202 kb on - strand, within yfdC at 4382.202 kb on - strand, within yfdC at 4382.202 kb on - strand, within yfdC at 4382.275 kb on + strand, within yfdC at 4382.315 kb on - strand, within yfdC at 4382.315 kb on - strand, within yfdC at 4382.374 kb on - strand, within yfdC at 4382.385 kb on + strand, within yfdC at 4382.385 kb on + strand, within yfdC at 4382.386 kb on - strand, within yfdC at 4382.597 kb on - strand at 4382.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,380,738 - intS OKFHMN_22520 0.40 +0.7 4,380,781 + intS OKFHMN_22520 0.43 +0.7 4,380,899 - intS OKFHMN_22520 0.54 -0.1 4,380,905 - intS OKFHMN_22520 0.54 +1.6 4,381,126 + intS OKFHMN_22520 0.73 +0.0 4,381,127 - intS OKFHMN_22520 0.73 +1.0 4,381,240 + intS OKFHMN_22520 0.83 +0.4 4,381,240 + intS OKFHMN_22520 0.83 +0.5 4,381,328 + -1.1 4,381,344 - -0.8 4,381,353 + +1.4 4,381,353 + -1.4 4,381,354 - +0.0 4,381,369 + -0.7 4,381,370 - +1.0 4,381,649 + Arg_trna OKFHMN_22525 0.69 -0.3 4,381,652 - Arg_trna OKFHMN_22525 0.73 +0.2 4,381,652 - Arg_trna OKFHMN_22525 0.73 +0.0 4,381,660 - Arg_trna OKFHMN_22525 0.84 +0.4 4,381,664 - -0.3 4,381,685 + +0.5 4,381,685 + +0.4 4,381,686 - -0.8 4,381,714 - +0.8 4,381,869 + yfdC OKFHMN_22530 0.13 -0.1 4,381,870 - yfdC OKFHMN_22530 0.13 -0.3 4,381,945 - yfdC OKFHMN_22530 0.21 +0.5 4,382,031 + yfdC OKFHMN_22530 0.30 +0.7 4,382,032 - yfdC OKFHMN_22530 0.31 +2.2 4,382,075 - yfdC OKFHMN_22530 0.35 +0.6 4,382,075 - yfdC OKFHMN_22530 0.35 +0.3 4,382,199 + yfdC OKFHMN_22530 0.48 +0.5 4,382,202 - yfdC OKFHMN_22530 0.49 +0.8 4,382,202 - yfdC OKFHMN_22530 0.49 +1.9 4,382,202 - yfdC OKFHMN_22530 0.49 +0.1 4,382,275 + yfdC OKFHMN_22530 0.57 -0.7 4,382,315 - yfdC OKFHMN_22530 0.61 +0.2 4,382,315 - yfdC OKFHMN_22530 0.61 +0.6 4,382,374 - yfdC OKFHMN_22530 0.67 -1.1 4,382,385 + yfdC OKFHMN_22530 0.68 +0.7 4,382,385 + yfdC OKFHMN_22530 0.68 +1.4 4,382,386 - yfdC OKFHMN_22530 0.68 +0.5 4,382,597 - -0.4 4,382,597 - -0.5
Or see this region's nucleotide sequence