Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oxc and yfdV are separated by 69 nucleotides yfdV and OKFHMN_22415 are separated by 73 nucleotides OKFHMN_22415 and yfdE are separated by 32 nucleotides
OKFHMN_22405: oxc - oxalyl-CoA decarboxylase, at 4,354,497 to 4,356,191
oxc
OKFHMN_22410: yfdV - transporter YfdV, at 4,356,261 to 4,357,205
yfdV
OKFHMN_22415: OKFHMN_22415 - CoA-transferase, at 4,357,279 to 4,357,509
_22415
OKFHMN_22420: yfdE - CoA:oxalate CoA-transferase, at 4,357,542 to 4,358,420
yfdE
Position (kb) 4356
4357
4358 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4355.481 kb on - strand, within oxc at 4355.481 kb on - strand, within oxc at 4355.624 kb on - strand, within oxc at 4355.717 kb on + strand, within oxc at 4355.718 kb on - strand, within oxc at 4355.721 kb on + strand, within oxc at 4355.722 kb on - strand, within oxc at 4355.750 kb on + strand, within oxc at 4355.795 kb on + strand, within oxc at 4356.108 kb on - strand at 4356.111 kb on - strand at 4356.257 kb on + strand at 4356.318 kb on + strand at 4356.556 kb on + strand, within yfdV at 4356.618 kb on - strand, within yfdV at 4356.660 kb on - strand, within yfdV at 4356.878 kb on + strand, within yfdV at 4356.879 kb on - strand, within yfdV at 4356.957 kb on - strand, within yfdV at 4357.007 kb on + strand, within yfdV at 4357.049 kb on - strand, within yfdV at 4357.063 kb on + strand, within yfdV at 4357.207 kb on + strand at 4357.319 kb on + strand, within OKFHMN_22415 at 4357.320 kb on - strand, within OKFHMN_22415 at 4357.377 kb on + strand, within OKFHMN_22415 at 4357.645 kb on + strand, within yfdE at 4357.647 kb on + strand, within yfdE at 4357.647 kb on + strand, within yfdE at 4357.795 kb on + strand, within yfdE at 4357.931 kb on + strand, within yfdE at 4357.931 kb on + strand, within yfdE at 4357.977 kb on + strand, within yfdE at 4358.153 kb on + strand, within yfdE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,355,481 - oxc OKFHMN_22405 0.58 +0.8 4,355,481 - oxc OKFHMN_22405 0.58 -3.4 4,355,624 - oxc OKFHMN_22405 0.66 -0.7 4,355,717 + oxc OKFHMN_22405 0.72 -0.4 4,355,718 - oxc OKFHMN_22405 0.72 -0.4 4,355,721 + oxc OKFHMN_22405 0.72 -2.5 4,355,722 - oxc OKFHMN_22405 0.72 -0.1 4,355,750 + oxc OKFHMN_22405 0.74 -1.8 4,355,795 + oxc OKFHMN_22405 0.77 +0.3 4,356,108 - -1.2 4,356,111 - -0.1 4,356,257 + +1.3 4,356,318 + -2.7 4,356,556 + yfdV OKFHMN_22410 0.31 +1.2 4,356,618 - yfdV OKFHMN_22410 0.38 +0.6 4,356,660 - yfdV OKFHMN_22410 0.42 -1.0 4,356,878 + yfdV OKFHMN_22410 0.65 -2.3 4,356,879 - yfdV OKFHMN_22410 0.65 +0.9 4,356,957 - yfdV OKFHMN_22410 0.74 +0.9 4,357,007 + yfdV OKFHMN_22410 0.79 -2.6 4,357,049 - yfdV OKFHMN_22410 0.83 +0.3 4,357,063 + yfdV OKFHMN_22410 0.85 +0.5 4,357,207 + +0.1 4,357,319 + OKFHMN_22415 0.17 -0.5 4,357,320 - OKFHMN_22415 0.18 -0.0 4,357,377 + OKFHMN_22415 0.42 +0.6 4,357,645 + yfdE OKFHMN_22420 0.12 +0.4 4,357,647 + yfdE OKFHMN_22420 0.12 +0.4 4,357,647 + yfdE OKFHMN_22420 0.12 -0.3 4,357,795 + yfdE OKFHMN_22420 0.29 +0.3 4,357,931 + yfdE OKFHMN_22420 0.44 +0.5 4,357,931 + yfdE OKFHMN_22420 0.44 +0.2 4,357,977 + yfdE OKFHMN_22420 0.49 -0.2 4,358,153 + yfdE OKFHMN_22420 0.70 +0.0
Or see this region's nucleotide sequence