Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22395

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfdY and OKFHMN_22390 are separated by 76 nucleotidesOKFHMN_22390 and yfdX are separated by 295 nucleotidesyfdX and frc are separated by 512 nucleotides OKFHMN_22385: yfdY - Uncharacterized protein YfdY, at 4,351,155 to 4,351,397 yfdY OKFHMN_22390: OKFHMN_22390 - Uncharacterized lipoprotein YpdI, at 4,351,474 to 4,351,749 _22390 OKFHMN_22395: yfdX - Protein YfdX, at 4,352,045 to 4,352,680 yfdX OKFHMN_22400: frc - formyl-CoA transferase, at 4,353,193 to 4,354,443 frc Position (kb) 4352 4353Strain fitness (log2 ratio) -1 0 1at 4351.154 kb on + strandat 4351.154 kb on + strandat 4351.162 kb on - strandat 4351.187 kb on + strand, within yfdYat 4351.187 kb on + strand, within yfdYat 4351.219 kb on + strand, within yfdYat 4351.281 kb on + strand, within yfdYat 4351.284 kb on + strand, within yfdYat 4351.300 kb on + strand, within yfdYat 4351.373 kb on + strandat 4351.395 kb on + strandat 4351.396 kb on - strandat 4351.543 kb on + strand, within OKFHMN_22390at 4351.570 kb on - strand, within OKFHMN_22390at 4351.801 kb on - strandat 4352.189 kb on - strand, within yfdXat 4352.189 kb on - strand, within yfdXat 4352.384 kb on - strand, within yfdXat 4352.415 kb on + strand, within yfdXat 4352.460 kb on - strand, within yfdXat 4353.399 kb on + strand, within frc

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,351,154 + -0.3
4,351,154 + +1.0
4,351,162 - +1.4
4,351,187 + yfdY OKFHMN_22385 0.13 -1.2
4,351,187 + yfdY OKFHMN_22385 0.13 +0.3
4,351,219 + yfdY OKFHMN_22385 0.26 +0.2
4,351,281 + yfdY OKFHMN_22385 0.52 -1.1
4,351,284 + yfdY OKFHMN_22385 0.53 +0.0
4,351,300 + yfdY OKFHMN_22385 0.60 -0.4
4,351,373 + +0.9
4,351,395 + +0.2
4,351,396 - +1.2
4,351,543 + OKFHMN_22390 0.25 +0.5
4,351,570 - OKFHMN_22390 0.35 -0.8
4,351,801 - -0.5
4,352,189 - yfdX OKFHMN_22395 0.23 +1.2
4,352,189 - yfdX OKFHMN_22395 0.23 -1.4
4,352,384 - yfdX OKFHMN_22395 0.53 +0.9
4,352,415 + yfdX OKFHMN_22395 0.58 -0.5
4,352,460 - yfdX OKFHMN_22395 0.65 -0.3
4,353,399 + frc OKFHMN_22400 0.16 +0.7

Or see this region's nucleotide sequence