Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eutL and eutK are separated by 12 nucleotides eutK and eutR are separated by 45 nucleotides eutR and hemF are separated by 5 nucleotides hemF and amiA are separated by 3 nucleotides
OKFHMN_22080: eutL - ethanolamine utilization microcompartment protein EutL, at 4,295,076 to 4,295,735
eutL
OKFHMN_22085: eutK - ethanolamine utilization microcompartment protein EutK, at 4,295,748 to 4,296,248
eutK
OKFHMN_22090: eutR - HTH-type transcriptional regulator EutR, at 4,296,294 to 4,297,346
eutR
OKFHMN_22095: hemF - oxygen-dependent coproporphyrinogen oxidase, at 4,297,352 to 4,298,251
hemF
OKFHMN_22100: amiA - N-acetylmuramoyl-L-alanine amidase AmiA, at 4,298,255 to 4,299,124
amiA
Position (kb) 4296
4297
4298 Strain fitness (log2 ratio) -2
-1
0
1 at 4295.393 kb on + strand, within eutL at 4295.458 kb on + strand, within eutL at 4295.458 kb on + strand, within eutL at 4295.459 kb on - strand, within eutL at 4295.478 kb on + strand, within eutL at 4295.478 kb on + strand, within eutL at 4295.478 kb on + strand, within eutL at 4295.523 kb on + strand, within eutL at 4295.523 kb on + strand, within eutL at 4295.588 kb on - strand, within eutL at 4295.588 kb on - strand, within eutL at 4295.601 kb on + strand, within eutL at 4295.602 kb on - strand, within eutL at 4295.602 kb on - strand, within eutL at 4295.624 kb on + strand, within eutL at 4295.733 kb on + strand at 4295.829 kb on - strand, within eutK at 4296.109 kb on + strand, within eutK at 4296.110 kb on - strand, within eutK at 4296.110 kb on - strand, within eutK at 4296.208 kb on + strand at 4296.212 kb on + strand at 4296.288 kb on - strand at 4296.288 kb on - strand at 4296.308 kb on + strand at 4296.331 kb on - strand at 4296.384 kb on - strand at 4296.689 kb on + strand, within eutR at 4296.779 kb on - strand, within eutR at 4296.782 kb on - strand, within eutR at 4296.782 kb on - strand, within eutR at 4296.782 kb on - strand, within eutR at 4296.782 kb on - strand, within eutR at 4296.785 kb on + strand, within eutR at 4296.785 kb on + strand, within eutR at 4296.785 kb on + strand, within eutR at 4296.785 kb on + strand, within eutR at 4296.785 kb on + strand, within eutR at 4296.785 kb on + strand, within eutR at 4296.786 kb on - strand, within eutR at 4296.786 kb on - strand, within eutR at 4296.786 kb on - strand, within eutR at 4296.786 kb on - strand, within eutR at 4296.827 kb on + strand, within eutR at 4297.005 kb on + strand, within eutR at 4297.006 kb on - strand, within eutR at 4297.035 kb on + strand, within eutR at 4297.083 kb on - strand, within eutR at 4297.225 kb on + strand, within eutR at 4297.354 kb on - strand at 4297.372 kb on + strand at 4297.372 kb on + strand at 4297.386 kb on - strand at 4297.426 kb on - strand at 4297.533 kb on + strand, within hemF at 4297.534 kb on - strand, within hemF at 4297.534 kb on - strand, within hemF at 4297.549 kb on - strand, within hemF at 4297.578 kb on + strand, within hemF at 4297.610 kb on + strand, within hemF at 4297.615 kb on - strand, within hemF at 4297.615 kb on - strand, within hemF at 4297.626 kb on + strand, within hemF at 4297.627 kb on - strand, within hemF at 4297.649 kb on - strand, within hemF at 4297.682 kb on + strand, within hemF at 4297.738 kb on - strand, within hemF at 4297.783 kb on + strand, within hemF at 4297.950 kb on + strand, within hemF at 4297.950 kb on + strand, within hemF at 4297.951 kb on - strand, within hemF at 4298.101 kb on + strand, within hemF at 4298.101 kb on + strand, within hemF at 4298.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,295,393 + eutL OKFHMN_22080 0.48 +0.8 4,295,458 + eutL OKFHMN_22080 0.58 +0.1 4,295,458 + eutL OKFHMN_22080 0.58 +0.4 4,295,459 - eutL OKFHMN_22080 0.58 +0.2 4,295,478 + eutL OKFHMN_22080 0.61 +0.8 4,295,478 + eutL OKFHMN_22080 0.61 +0.2 4,295,478 + eutL OKFHMN_22080 0.61 -0.2 4,295,523 + eutL OKFHMN_22080 0.68 +1.1 4,295,523 + eutL OKFHMN_22080 0.68 +0.4 4,295,588 - eutL OKFHMN_22080 0.78 -0.2 4,295,588 - eutL OKFHMN_22080 0.78 -0.1 4,295,601 + eutL OKFHMN_22080 0.80 +0.3 4,295,602 - eutL OKFHMN_22080 0.80 +0.3 4,295,602 - eutL OKFHMN_22080 0.80 -2.4 4,295,624 + eutL OKFHMN_22080 0.83 -0.3 4,295,733 + +0.3 4,295,829 - eutK OKFHMN_22085 0.16 -0.1 4,296,109 + eutK OKFHMN_22085 0.72 -0.4 4,296,110 - eutK OKFHMN_22085 0.72 +0.7 4,296,110 - eutK OKFHMN_22085 0.72 -0.8 4,296,208 + +0.3 4,296,212 + +0.4 4,296,288 - +0.3 4,296,288 - -0.5 4,296,308 + -2.3 4,296,331 - -0.8 4,296,384 - -2.2 4,296,689 + eutR OKFHMN_22090 0.38 -0.3 4,296,779 - eutR OKFHMN_22090 0.46 +1.3 4,296,782 - eutR OKFHMN_22090 0.46 +0.1 4,296,782 - eutR OKFHMN_22090 0.46 +1.0 4,296,782 - eutR OKFHMN_22090 0.46 -0.0 4,296,782 - eutR OKFHMN_22090 0.46 +0.2 4,296,785 + eutR OKFHMN_22090 0.47 +0.5 4,296,785 + eutR OKFHMN_22090 0.47 +1.0 4,296,785 + eutR OKFHMN_22090 0.47 -0.4 4,296,785 + eutR OKFHMN_22090 0.47 +0.1 4,296,785 + eutR OKFHMN_22090 0.47 +0.7 4,296,785 + eutR OKFHMN_22090 0.47 -0.2 4,296,786 - eutR OKFHMN_22090 0.47 -0.5 4,296,786 - eutR OKFHMN_22090 0.47 -0.4 4,296,786 - eutR OKFHMN_22090 0.47 +0.0 4,296,786 - eutR OKFHMN_22090 0.47 -0.1 4,296,827 + eutR OKFHMN_22090 0.51 +0.4 4,297,005 + eutR OKFHMN_22090 0.68 +0.1 4,297,006 - eutR OKFHMN_22090 0.68 -0.1 4,297,035 + eutR OKFHMN_22090 0.70 -0.0 4,297,083 - eutR OKFHMN_22090 0.75 +1.5 4,297,225 + eutR OKFHMN_22090 0.88 +0.1 4,297,354 - -0.8 4,297,372 + +0.3 4,297,372 + +0.4 4,297,386 - +0.5 4,297,426 - +1.2 4,297,533 + hemF OKFHMN_22095 0.20 +0.6 4,297,534 - hemF OKFHMN_22095 0.20 +0.4 4,297,534 - hemF OKFHMN_22095 0.20 +0.1 4,297,549 - hemF OKFHMN_22095 0.22 +0.9 4,297,578 + hemF OKFHMN_22095 0.25 +0.2 4,297,610 + hemF OKFHMN_22095 0.29 -0.4 4,297,615 - hemF OKFHMN_22095 0.29 +0.1 4,297,615 - hemF OKFHMN_22095 0.29 +1.2 4,297,626 + hemF OKFHMN_22095 0.30 -0.0 4,297,627 - hemF OKFHMN_22095 0.31 +0.4 4,297,649 - hemF OKFHMN_22095 0.33 -1.7 4,297,682 + hemF OKFHMN_22095 0.37 +0.4 4,297,738 - hemF OKFHMN_22095 0.43 +0.3 4,297,783 + hemF OKFHMN_22095 0.48 +0.8 4,297,950 + hemF OKFHMN_22095 0.66 +1.0 4,297,950 + hemF OKFHMN_22095 0.66 +0.5 4,297,951 - hemF OKFHMN_22095 0.67 +0.4 4,298,101 + hemF OKFHMN_22095 0.83 -0.2 4,298,101 + hemF OKFHMN_22095 0.83 -0.6 4,298,228 - +0.3
Or see this region's nucleotide sequence