Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22025

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nteutP and eutQ overlap by 26 nucleotideseutQ and eutT overlap by 4 nucleotideseutT and pta overlap by 4 nucleotides OKFHMN_22015: eutP - ethanolamine utilization acetate kinase EutP, at 4,282,998 to 4,283,477 eutP OKFHMN_22020: eutQ - ethanolamine utilization acetate kinase EutQ, at 4,283,452 to 4,284,153 eutQ OKFHMN_22025: eutT - ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT, at 4,284,150 to 4,284,881 eutT OKFHMN_22030: pta - phosphate acetyltransferase, at 4,284,878 to 4,285,894 pta Position (kb) 4284 4285Strain fitness (log2 ratio) -2 -1 0 1 2at 4283.171 kb on - strand, within eutPat 4283.171 kb on - strand, within eutPat 4283.377 kb on + strand, within eutPat 4283.418 kb on + strand, within eutPat 4283.538 kb on + strand, within eutQat 4283.538 kb on + strand, within eutQat 4283.539 kb on - strand, within eutQat 4283.580 kb on + strand, within eutQat 4283.833 kb on - strand, within eutQat 4284.290 kb on + strand, within eutTat 4284.425 kb on + strand, within eutTat 4284.801 kb on + strand, within eutTat 4284.802 kb on - strand, within eutTat 4284.824 kb on - strandat 4284.945 kb on + strandat 4285.072 kb on - strand, within ptaat 4285.309 kb on + strand, within ptaat 4285.386 kb on + strand, within ptaat 4285.576 kb on - strand, within ptaat 4285.755 kb on + strand, within ptaat 4285.756 kb on - strand, within ptaat 4285.798 kb on + strandat 4285.799 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,283,171 - eutP OKFHMN_22015 0.36 +0.7
4,283,171 - eutP OKFHMN_22015 0.36 -2.6
4,283,377 + eutP OKFHMN_22015 0.79 +0.3
4,283,418 + eutP OKFHMN_22015 0.88 +0.6
4,283,538 + eutQ OKFHMN_22020 0.12 -0.1
4,283,538 + eutQ OKFHMN_22020 0.12 -0.3
4,283,539 - eutQ OKFHMN_22020 0.12 -1.8
4,283,580 + eutQ OKFHMN_22020 0.18 -1.5
4,283,833 - eutQ OKFHMN_22020 0.54 +2.3
4,284,290 + eutT OKFHMN_22025 0.19 -0.2
4,284,425 + eutT OKFHMN_22025 0.38 -0.5
4,284,801 + eutT OKFHMN_22025 0.89 -0.0
4,284,802 - eutT OKFHMN_22025 0.89 +0.7
4,284,824 - -0.6
4,284,945 + -0.0
4,285,072 - pta OKFHMN_22030 0.19 -1.1
4,285,309 + pta OKFHMN_22030 0.42 -0.9
4,285,386 + pta OKFHMN_22030 0.50 +0.1
4,285,576 - pta OKFHMN_22030 0.69 +0.4
4,285,755 + pta OKFHMN_22030 0.86 +1.7
4,285,756 - pta OKFHMN_22030 0.86 +0.5
4,285,798 + +0.8
4,285,799 - +0.3

Or see this region's nucleotide sequence