Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bisC and dmsB overlap by 4 nucleotides dmsB and dmsC overlap by 8 nucleotides dmsC and dsrA overlap by 1 nucleotides
OKFHMN_21685: bisC - dimethyl sulfoxide reductase subunit A, at 4,208,758 to 4,211,139
bisC
OKFHMN_21690: dmsB - dimethylsulfoxide reductase subunit B, at 4,211,136 to 4,211,765
dmsB
OKFHMN_21695: dmsC - dimethyl sulfoxide reductase, at 4,211,758 to 4,212,579
dmsC
OKFHMN_21700: dsrA - ferredoxin, at 4,212,579 to 4,213,433
dsrA
Position (kb)
4211
4212 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4210.140 kb on + strand, within bisC at 4210.140 kb on + strand, within bisC at 4210.140 kb on + strand, within bisC at 4210.170 kb on + strand, within bisC at 4210.170 kb on + strand, within bisC at 4210.171 kb on - strand, within bisC at 4210.234 kb on - strand, within bisC at 4210.250 kb on + strand, within bisC at 4210.285 kb on + strand, within bisC at 4210.361 kb on - strand, within bisC at 4210.365 kb on + strand, within bisC at 4210.366 kb on - strand, within bisC at 4210.366 kb on - strand, within bisC at 4210.726 kb on + strand, within bisC at 4210.830 kb on + strand, within bisC at 4210.915 kb on - strand at 4210.989 kb on - strand at 4210.996 kb on - strand at 4211.034 kb on + strand at 4211.035 kb on - strand at 4211.061 kb on - strand at 4211.079 kb on + strand at 4211.179 kb on + strand at 4211.283 kb on + strand, within dmsB at 4211.283 kb on + strand, within dmsB at 4211.284 kb on - strand, within dmsB at 4211.336 kb on + strand, within dmsB at 4211.349 kb on + strand, within dmsB at 4211.350 kb on - strand, within dmsB at 4211.352 kb on - strand, within dmsB at 4211.423 kb on + strand, within dmsB at 4211.424 kb on - strand, within dmsB at 4211.462 kb on + strand, within dmsB at 4211.462 kb on + strand, within dmsB at 4211.462 kb on + strand, within dmsB at 4211.463 kb on - strand, within dmsB at 4211.574 kb on - strand, within dmsB at 4211.622 kb on - strand, within dmsB at 4211.844 kb on + strand, within dmsC at 4211.889 kb on - strand, within dmsC at 4211.889 kb on - strand, within dmsC at 4211.916 kb on - strand, within dmsC at 4211.932 kb on - strand, within dmsC at 4211.936 kb on + strand, within dmsC at 4211.936 kb on + strand, within dmsC at 4211.937 kb on - strand, within dmsC at 4212.009 kb on + strand, within dmsC at 4212.093 kb on + strand, within dmsC at 4212.093 kb on + strand, within dmsC at 4212.093 kb on + strand, within dmsC at 4212.153 kb on + strand, within dmsC at 4212.153 kb on + strand, within dmsC at 4212.153 kb on + strand, within dmsC at 4212.178 kb on + strand, within dmsC at 4212.178 kb on + strand, within dmsC at 4212.179 kb on - strand, within dmsC at 4212.193 kb on - strand, within dmsC at 4212.200 kb on + strand, within dmsC at 4212.201 kb on - strand, within dmsC at 4212.201 kb on - strand, within dmsC at 4212.201 kb on - strand, within dmsC at 4212.201 kb on - strand, within dmsC at 4212.204 kb on + strand, within dmsC at 4212.204 kb on + strand, within dmsC at 4212.233 kb on + strand, within dmsC at 4212.233 kb on + strand, within dmsC at 4212.233 kb on + strand, within dmsC at 4212.234 kb on - strand, within dmsC at 4212.419 kb on + strand, within dmsC at 4212.420 kb on - strand, within dmsC at 4212.524 kb on + strand at 4212.525 kb on - strand at 4212.531 kb on - strand at 4212.546 kb on + strand at 4212.567 kb on + strand at 4212.584 kb on - strand at 4212.590 kb on + strand at 4212.595 kb on + strand at 4212.722 kb on + strand, within dsrA at 4212.722 kb on + strand, within dsrA at 4212.747 kb on - strand, within dsrA at 4212.747 kb on - strand, within dsrA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,210,140 + bisC OKFHMN_21685 0.58 -0.0 4,210,140 + bisC OKFHMN_21685 0.58 +0.8 4,210,140 + bisC OKFHMN_21685 0.58 -0.4 4,210,170 + bisC OKFHMN_21685 0.59 +0.7 4,210,170 + bisC OKFHMN_21685 0.59 +0.7 4,210,171 - bisC OKFHMN_21685 0.59 +0.2 4,210,234 - bisC OKFHMN_21685 0.62 -0.1 4,210,250 + bisC OKFHMN_21685 0.63 -0.1 4,210,285 + bisC OKFHMN_21685 0.64 +0.7 4,210,361 - bisC OKFHMN_21685 0.67 -2.4 4,210,365 + bisC OKFHMN_21685 0.67 -0.9 4,210,366 - bisC OKFHMN_21685 0.68 -2.3 4,210,366 - bisC OKFHMN_21685 0.68 -0.7 4,210,726 + bisC OKFHMN_21685 0.83 +0.3 4,210,830 + bisC OKFHMN_21685 0.87 -0.9 4,210,915 - -0.0 4,210,989 - -0.8 4,210,996 - +0.3 4,211,034 + +1.0 4,211,035 - -0.4 4,211,061 - -1.2 4,211,079 + +0.1 4,211,179 + -0.1 4,211,283 + dmsB OKFHMN_21690 0.23 +0.4 4,211,283 + dmsB OKFHMN_21690 0.23 +0.6 4,211,284 - dmsB OKFHMN_21690 0.23 -0.8 4,211,336 + dmsB OKFHMN_21690 0.32 -2.0 4,211,349 + dmsB OKFHMN_21690 0.34 -1.4 4,211,350 - dmsB OKFHMN_21690 0.34 -1.4 4,211,352 - dmsB OKFHMN_21690 0.34 -2.7 4,211,423 + dmsB OKFHMN_21690 0.46 -1.0 4,211,424 - dmsB OKFHMN_21690 0.46 -0.6 4,211,462 + dmsB OKFHMN_21690 0.52 -0.3 4,211,462 + dmsB OKFHMN_21690 0.52 -0.2 4,211,462 + dmsB OKFHMN_21690 0.52 +1.2 4,211,463 - dmsB OKFHMN_21690 0.52 -0.5 4,211,574 - dmsB OKFHMN_21690 0.70 -1.3 4,211,622 - dmsB OKFHMN_21690 0.77 -0.8 4,211,844 + dmsC OKFHMN_21695 0.10 -0.5 4,211,889 - dmsC OKFHMN_21695 0.16 +0.4 4,211,889 - dmsC OKFHMN_21695 0.16 -0.1 4,211,916 - dmsC OKFHMN_21695 0.19 +0.2 4,211,932 - dmsC OKFHMN_21695 0.21 +2.4 4,211,936 + dmsC OKFHMN_21695 0.22 +0.3 4,211,936 + dmsC OKFHMN_21695 0.22 +0.6 4,211,937 - dmsC OKFHMN_21695 0.22 -0.5 4,212,009 + dmsC OKFHMN_21695 0.31 -0.1 4,212,093 + dmsC OKFHMN_21695 0.41 +0.8 4,212,093 + dmsC OKFHMN_21695 0.41 -1.4 4,212,093 + dmsC OKFHMN_21695 0.41 -0.9 4,212,153 + dmsC OKFHMN_21695 0.48 -0.1 4,212,153 + dmsC OKFHMN_21695 0.48 +0.0 4,212,153 + dmsC OKFHMN_21695 0.48 +0.4 4,212,178 + dmsC OKFHMN_21695 0.51 -0.0 4,212,178 + dmsC OKFHMN_21695 0.51 +0.2 4,212,179 - dmsC OKFHMN_21695 0.51 -1.5 4,212,193 - dmsC OKFHMN_21695 0.53 +0.9 4,212,200 + dmsC OKFHMN_21695 0.54 +0.4 4,212,201 - dmsC OKFHMN_21695 0.54 -0.3 4,212,201 - dmsC OKFHMN_21695 0.54 +0.2 4,212,201 - dmsC OKFHMN_21695 0.54 +0.6 4,212,201 - dmsC OKFHMN_21695 0.54 -0.3 4,212,204 + dmsC OKFHMN_21695 0.54 +0.6 4,212,204 + dmsC OKFHMN_21695 0.54 +0.9 4,212,233 + dmsC OKFHMN_21695 0.58 +0.1 4,212,233 + dmsC OKFHMN_21695 0.58 +0.4 4,212,233 + dmsC OKFHMN_21695 0.58 +0.4 4,212,234 - dmsC OKFHMN_21695 0.58 +0.5 4,212,419 + dmsC OKFHMN_21695 0.80 -0.6 4,212,420 - dmsC OKFHMN_21695 0.81 +0.6 4,212,524 + -1.6 4,212,525 - -0.1 4,212,531 - -1.9 4,212,546 + -0.6 4,212,567 + -0.1 4,212,584 - -2.8 4,212,590 + -1.0 4,212,595 + -2.6 4,212,722 + dsrA OKFHMN_21700 0.17 -0.2 4,212,722 + dsrA OKFHMN_21700 0.17 +0.7 4,212,747 - dsrA OKFHMN_21700 0.20 +0.4 4,212,747 - dsrA OKFHMN_21700 0.20 +1.1
Or see this region's nucleotide sequence