Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21465

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfhb and tadA are separated by 57 nucleotidestadA and mltF overlap by 4 nucleotidesmltF and purL are separated by 256 nucleotides OKFHMN_21455: yfhb - phosphatidylglycerophosphatase C, at 4,155,646 to 4,156,281 yfhb OKFHMN_21460: tadA - tRNA adenosine(34) deaminase TadA, at 4,156,339 to 4,156,842 tadA OKFHMN_21465: mltF - membrane-bound lytic murein transglycosylase MltF, at 4,156,839 to 4,158,395 mltF OKFHMN_21470: purL - phosphoribosylformylglycinamidine synthase, at 4,158,652 to 4,162,539 purL Position (kb) 4156 4157 4158 4159Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4155.964 kb on + strand, within yfhbat 4155.965 kb on - strand, within yfhbat 4155.965 kb on - strand, within yfhbat 4156.034 kb on - strand, within yfhbat 4156.181 kb on - strand, within yfhbat 4156.189 kb on + strand, within yfhbat 4156.189 kb on + strand, within yfhbat 4156.190 kb on - strand, within yfhbat 4156.191 kb on + strand, within yfhbat 4156.284 kb on + strandat 4156.291 kb on + strandat 4156.292 kb on - strandat 4156.302 kb on + strandat 4156.303 kb on - strandat 4156.303 kb on - strandat 4156.304 kb on + strandat 4156.322 kb on + strandat 4156.900 kb on + strandat 4157.009 kb on + strand, within mltFat 4157.036 kb on - strand, within mltFat 4157.061 kb on - strand, within mltFat 4157.061 kb on - strand, within mltFat 4157.077 kb on + strand, within mltFat 4157.077 kb on + strand, within mltFat 4157.078 kb on - strand, within mltFat 4157.111 kb on - strand, within mltFat 4157.125 kb on + strand, within mltFat 4157.125 kb on + strand, within mltFat 4157.126 kb on - strand, within mltFat 4157.226 kb on - strand, within mltFat 4157.226 kb on - strand, within mltFat 4157.240 kb on + strand, within mltFat 4157.241 kb on - strand, within mltFat 4157.246 kb on - strand, within mltFat 4157.300 kb on + strand, within mltFat 4157.301 kb on - strand, within mltFat 4157.309 kb on + strand, within mltFat 4157.310 kb on - strand, within mltFat 4157.504 kb on - strand, within mltFat 4157.691 kb on + strand, within mltFat 4157.692 kb on - strand, within mltFat 4157.692 kb on - strand, within mltFat 4157.692 kb on - strand, within mltFat 4157.871 kb on + strand, within mltFat 4157.872 kb on - strand, within mltFat 4157.970 kb on - strand, within mltFat 4158.022 kb on + strand, within mltFat 4158.022 kb on + strand, within mltFat 4158.022 kb on + strand, within mltFat 4158.023 kb on - strand, within mltFat 4158.027 kb on - strand, within mltFat 4158.062 kb on + strand, within mltFat 4158.229 kb on + strand, within mltFat 4158.229 kb on + strand, within mltFat 4158.242 kb on + strandat 4158.374 kb on - strandat 4158.443 kb on + strandat 4158.507 kb on + strandat 4158.508 kb on - strandat 4158.508 kb on - strandat 4158.554 kb on + strandat 4158.596 kb on + strandat 4158.596 kb on + strandat 4158.597 kb on - strandat 4158.651 kb on + strandat 4158.939 kb on + strandat 4158.939 kb on + strandat 4158.939 kb on + strandat 4158.950 kb on + strandat 4158.985 kb on + strandat 4158.986 kb on - strandat 4158.986 kb on - strandat 4158.988 kb on + strandat 4158.988 kb on + strandat 4158.988 kb on + strandat 4158.988 kb on + strandat 4158.988 kb on + strandat 4158.989 kb on - strandat 4158.989 kb on - strandat 4158.989 kb on - strandat 4158.990 kb on + strandat 4158.990 kb on + strandat 4158.990 kb on + strandat 4158.991 kb on - strandat 4158.991 kb on - strandat 4158.992 kb on + strandat 4158.993 kb on - strandat 4159.079 kb on + strand, within purLat 4159.080 kb on - strand, within purLat 4159.270 kb on + strand, within purLat 4159.271 kb on - strand, within purLat 4159.272 kb on + strand, within purLat 4159.273 kb on - strand, within purLat 4159.273 kb on - strand, within purLat 4159.273 kb on - strand, within purL

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
4,155,964 + yfhb OKFHMN_21455 0.50 -0.6
4,155,965 - yfhb OKFHMN_21455 0.50 -1.7
4,155,965 - yfhb OKFHMN_21455 0.50 -0.1
4,156,034 - yfhb OKFHMN_21455 0.61 -0.2
4,156,181 - yfhb OKFHMN_21455 0.84 -3.5
4,156,189 + yfhb OKFHMN_21455 0.85 -1.0
4,156,189 + yfhb OKFHMN_21455 0.85 -0.1
4,156,190 - yfhb OKFHMN_21455 0.86 -0.2
4,156,191 + yfhb OKFHMN_21455 0.86 -0.7
4,156,284 + +0.8
4,156,291 + +0.4
4,156,292 - +1.3
4,156,302 + -0.1
4,156,303 - -0.1
4,156,303 - -0.1
4,156,304 + +0.1
4,156,322 + -3.6
4,156,900 + +1.5
4,157,009 + mltF OKFHMN_21465 0.11 -0.8
4,157,036 - mltF OKFHMN_21465 0.13 +0.8
4,157,061 - mltF OKFHMN_21465 0.14 +0.4
4,157,061 - mltF OKFHMN_21465 0.14 -0.2
4,157,077 + mltF OKFHMN_21465 0.15 +0.5
4,157,077 + mltF OKFHMN_21465 0.15 +0.4
4,157,078 - mltF OKFHMN_21465 0.15 -0.0
4,157,111 - mltF OKFHMN_21465 0.17 +0.0
4,157,125 + mltF OKFHMN_21465 0.18 +1.1
4,157,125 + mltF OKFHMN_21465 0.18 +0.8
4,157,126 - mltF OKFHMN_21465 0.18 +1.4
4,157,226 - mltF OKFHMN_21465 0.25 +0.3
4,157,226 - mltF OKFHMN_21465 0.25 -0.1
4,157,240 + mltF OKFHMN_21465 0.26 -0.8
4,157,241 - mltF OKFHMN_21465 0.26 -1.6
4,157,246 - mltF OKFHMN_21465 0.26 -0.0
4,157,300 + mltF OKFHMN_21465 0.30 +0.7
4,157,301 - mltF OKFHMN_21465 0.30 +0.8
4,157,309 + mltF OKFHMN_21465 0.30 +0.6
4,157,310 - mltF OKFHMN_21465 0.30 +0.8
4,157,504 - mltF OKFHMN_21465 0.43 -0.4
4,157,691 + mltF OKFHMN_21465 0.55 +0.5
4,157,692 - mltF OKFHMN_21465 0.55 -1.0
4,157,692 - mltF OKFHMN_21465 0.55 +0.3
4,157,692 - mltF OKFHMN_21465 0.55 -1.0
4,157,871 + mltF OKFHMN_21465 0.66 -0.3
4,157,872 - mltF OKFHMN_21465 0.66 -0.1
4,157,970 - mltF OKFHMN_21465 0.73 +0.2
4,158,022 + mltF OKFHMN_21465 0.76 +0.0
4,158,022 + mltF OKFHMN_21465 0.76 -1.6
4,158,022 + mltF OKFHMN_21465 0.76 +0.5
4,158,023 - mltF OKFHMN_21465 0.76 -0.1
4,158,027 - mltF OKFHMN_21465 0.76 -0.1
4,158,062 + mltF OKFHMN_21465 0.79 +0.9
4,158,229 + mltF OKFHMN_21465 0.89 +0.7
4,158,229 + mltF OKFHMN_21465 0.89 +0.1
4,158,242 + -0.2
4,158,374 - -0.5
4,158,443 + -0.2
4,158,507 + -1.9
4,158,508 - +0.2
4,158,508 - -1.7
4,158,554 + -0.3
4,158,596 + +0.3
4,158,596 + -0.5
4,158,597 - -1.3
4,158,651 + -2.3
4,158,939 + -2.2
4,158,939 + -3.4
4,158,939 + -2.4
4,158,950 + -2.8
4,158,985 + -3.1
4,158,986 - -2.8
4,158,986 - -5.8
4,158,988 + -4.5
4,158,988 + -2.0
4,158,988 + -5.7
4,158,988 + -2.9
4,158,988 + -3.5
4,158,989 - -2.2
4,158,989 - -2.3
4,158,989 - -5.1
4,158,990 + -4.3
4,158,990 + -1.6
4,158,990 + -1.6
4,158,991 - -3.3
4,158,991 - -4.5
4,158,992 + -3.2
4,158,993 - -1.8
4,159,079 + purL OKFHMN_21470 0.11 -3.8
4,159,080 - purL OKFHMN_21470 0.11 -1.6
4,159,270 + purL OKFHMN_21470 0.16 -2.4
4,159,271 - purL OKFHMN_21470 0.16 -3.5
4,159,272 + purL OKFHMN_21470 0.16 -3.8
4,159,273 - purL OKFHMN_21470 0.16 -0.8
4,159,273 - purL OKFHMN_21470 0.16 -1.8
4,159,273 - purL OKFHMN_21470 0.16 -2.1

Or see this region's nucleotide sequence