Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21460

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfhH and yfhb are separated by 208 nucleotidesyfhb and tadA are separated by 57 nucleotidestadA and mltF overlap by 4 nucleotides OKFHMN_21450: yfhH - MurR/RpiR family transcriptional regulator, at 4,154,589 to 4,155,437 yfhH OKFHMN_21455: yfhb - phosphatidylglycerophosphatase C, at 4,155,646 to 4,156,281 yfhb OKFHMN_21460: tadA - tRNA adenosine(34) deaminase TadA, at 4,156,339 to 4,156,842 tadA OKFHMN_21465: mltF - membrane-bound lytic murein transglycosylase MltF, at 4,156,839 to 4,158,395 mltF Position (kb) 4156 4157Strain fitness (log2 ratio) -3 -2 -1 0 1at 4155.357 kb on + strandat 4155.427 kb on - strandat 4155.437 kb on + strandat 4155.438 kb on - strandat 4155.458 kb on - strandat 4155.458 kb on - strandat 4155.476 kb on + strandat 4155.477 kb on - strandat 4155.477 kb on - strandat 4155.544 kb on - strandat 4155.584 kb on + strandat 4155.592 kb on - strandat 4155.596 kb on + strandat 4155.597 kb on - strandat 4155.597 kb on - strandat 4155.600 kb on + strandat 4155.600 kb on + strandat 4155.600 kb on + strandat 4155.601 kb on - strandat 4155.601 kb on - strandat 4155.604 kb on - strandat 4155.640 kb on + strandat 4155.683 kb on + strandat 4155.683 kb on + strandat 4155.684 kb on - strandat 4155.709 kb on - strandat 4155.806 kb on + strand, within yfhbat 4155.964 kb on + strand, within yfhbat 4155.965 kb on - strand, within yfhbat 4155.965 kb on - strand, within yfhbat 4156.034 kb on - strand, within yfhbat 4156.181 kb on - strand, within yfhbat 4156.189 kb on + strand, within yfhbat 4156.189 kb on + strand, within yfhbat 4156.190 kb on - strand, within yfhbat 4156.191 kb on + strand, within yfhbat 4156.284 kb on + strandat 4156.291 kb on + strandat 4156.292 kb on - strandat 4156.302 kb on + strandat 4156.303 kb on - strandat 4156.303 kb on - strandat 4156.304 kb on + strandat 4156.322 kb on + strandat 4156.900 kb on + strandat 4157.009 kb on + strand, within mltFat 4157.036 kb on - strand, within mltFat 4157.061 kb on - strand, within mltFat 4157.061 kb on - strand, within mltFat 4157.077 kb on + strand, within mltFat 4157.077 kb on + strand, within mltFat 4157.078 kb on - strand, within mltFat 4157.111 kb on - strand, within mltFat 4157.125 kb on + strand, within mltFat 4157.125 kb on + strand, within mltFat 4157.126 kb on - strand, within mltFat 4157.226 kb on - strand, within mltFat 4157.226 kb on - strand, within mltFat 4157.240 kb on + strand, within mltFat 4157.241 kb on - strand, within mltFat 4157.246 kb on - strand, within mltFat 4157.300 kb on + strand, within mltFat 4157.301 kb on - strand, within mltFat 4157.309 kb on + strand, within mltFat 4157.310 kb on - strand, within mltFat 4157.504 kb on - strand, within mltFat 4157.691 kb on + strand, within mltFat 4157.692 kb on - strand, within mltFat 4157.692 kb on - strand, within mltFat 4157.692 kb on - strand, within mltF

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,155,357 + -2.2
4,155,427 - +0.2
4,155,437 + +0.8
4,155,438 - +0.8
4,155,458 - +0.6
4,155,458 - +0.5
4,155,476 + +0.2
4,155,477 - +0.2
4,155,477 - -1.9
4,155,544 - +0.9
4,155,584 + +0.5
4,155,592 - -0.3
4,155,596 + -0.2
4,155,597 - +0.3
4,155,597 - -0.6
4,155,600 + +0.3
4,155,600 + -1.1
4,155,600 + -0.2
4,155,601 - +1.1
4,155,601 - -2.9
4,155,604 - -0.6
4,155,640 + +1.0
4,155,683 + -2.6
4,155,683 + -0.9
4,155,684 - -0.3
4,155,709 - -0.3
4,155,806 + yfhb OKFHMN_21455 0.25 -0.1
4,155,964 + yfhb OKFHMN_21455 0.50 -0.6
4,155,965 - yfhb OKFHMN_21455 0.50 -1.7
4,155,965 - yfhb OKFHMN_21455 0.50 -0.1
4,156,034 - yfhb OKFHMN_21455 0.61 -0.2
4,156,181 - yfhb OKFHMN_21455 0.84 -3.5
4,156,189 + yfhb OKFHMN_21455 0.85 -1.0
4,156,189 + yfhb OKFHMN_21455 0.85 -0.1
4,156,190 - yfhb OKFHMN_21455 0.86 -0.2
4,156,191 + yfhb OKFHMN_21455 0.86 -0.7
4,156,284 + +0.8
4,156,291 + +0.4
4,156,292 - +1.3
4,156,302 + -0.1
4,156,303 - -0.1
4,156,303 - -0.1
4,156,304 + +0.1
4,156,322 + -3.6
4,156,900 + +1.5
4,157,009 + mltF OKFHMN_21465 0.11 -0.8
4,157,036 - mltF OKFHMN_21465 0.13 +0.8
4,157,061 - mltF OKFHMN_21465 0.14 +0.4
4,157,061 - mltF OKFHMN_21465 0.14 -0.2
4,157,077 + mltF OKFHMN_21465 0.15 +0.5
4,157,077 + mltF OKFHMN_21465 0.15 +0.4
4,157,078 - mltF OKFHMN_21465 0.15 -0.0
4,157,111 - mltF OKFHMN_21465 0.17 +0.0
4,157,125 + mltF OKFHMN_21465 0.18 +1.1
4,157,125 + mltF OKFHMN_21465 0.18 +0.8
4,157,126 - mltF OKFHMN_21465 0.18 +1.4
4,157,226 - mltF OKFHMN_21465 0.25 +0.3
4,157,226 - mltF OKFHMN_21465 0.25 -0.1
4,157,240 + mltF OKFHMN_21465 0.26 -0.8
4,157,241 - mltF OKFHMN_21465 0.26 -1.6
4,157,246 - mltF OKFHMN_21465 0.26 -0.0
4,157,300 + mltF OKFHMN_21465 0.30 +0.7
4,157,301 - mltF OKFHMN_21465 0.30 +0.8
4,157,309 + mltF OKFHMN_21465 0.30 +0.6
4,157,310 - mltF OKFHMN_21465 0.30 +0.8
4,157,504 - mltF OKFHMN_21465 0.43 -0.4
4,157,691 + mltF OKFHMN_21465 0.55 +0.5
4,157,692 - mltF OKFHMN_21465 0.55 -1.0
4,157,692 - mltF OKFHMN_21465 0.55 +0.3
4,157,692 - mltF OKFHMN_21465 0.55 -1.0

Or see this region's nucleotide sequence