Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_21015 and OKFHMN_21020 overlap by 4 nucleotides OKFHMN_21020 and OKFHMN_21025 are separated by 252 nucleotides OKFHMN_21025 and OKFHMN_21030 are separated by 90 nucleotides OKFHMN_21030 and OKFHMN_21045 are separated by 240 nucleotides
OKFHMN_21015: OKFHMN_21015 - Serine/threonine-protein phosphatase, at 4,085,532 to 4,086,197
_21015
OKFHMN_21020: OKFHMN_21020 - Antitermination protein Q, at 4,086,194 to 4,086,817
_21020
OKFHMN_21025: OKFHMN_21025 - Membrane protein, at 4,087,070 to 4,087,813
_21025
OKFHMN_21030: OKFHMN_21030 - hypothetical protein, at 4,087,904 to 4,088,233
_21030
OKFHMN_21045: OKFHMN_21045 - DUF1737 domain-containing protein, at 4,088,474 to 4,090,327
_21045
Position (kb) 4087
4088 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4086.355 kb on + strand, within OKFHMN_21020 at 4086.391 kb on + strand, within OKFHMN_21020 at 4086.435 kb on - strand, within OKFHMN_21020 at 4086.466 kb on + strand, within OKFHMN_21020 at 4086.478 kb on - strand, within OKFHMN_21020 at 4086.580 kb on + strand, within OKFHMN_21020 at 4086.580 kb on + strand, within OKFHMN_21020 at 4086.581 kb on - strand, within OKFHMN_21020 at 4086.581 kb on - strand, within OKFHMN_21020 at 4086.607 kb on - strand, within OKFHMN_21020 at 4086.634 kb on + strand, within OKFHMN_21020 at 4086.693 kb on + strand, within OKFHMN_21020 at 4086.743 kb on + strand, within OKFHMN_21020 at 4086.744 kb on - strand, within OKFHMN_21020 at 4086.744 kb on - strand, within OKFHMN_21020 at 4086.844 kb on + strand at 4086.913 kb on - strand at 4086.951 kb on - strand at 4086.979 kb on + strand at 4087.003 kb on - strand at 4087.003 kb on - strand at 4087.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,086,355 + OKFHMN_21020 0.26 +0.0 4,086,391 + OKFHMN_21020 0.32 -1.8 4,086,435 - OKFHMN_21020 0.39 +0.5 4,086,466 + OKFHMN_21020 0.44 -0.2 4,086,478 - OKFHMN_21020 0.46 +1.4 4,086,580 + OKFHMN_21020 0.62 +0.1 4,086,580 + OKFHMN_21020 0.62 -0.8 4,086,581 - OKFHMN_21020 0.62 -0.3 4,086,581 - OKFHMN_21020 0.62 +0.4 4,086,607 - OKFHMN_21020 0.66 -3.0 4,086,634 + OKFHMN_21020 0.71 -0.4 4,086,693 + OKFHMN_21020 0.80 -0.5 4,086,743 + OKFHMN_21020 0.88 -1.2 4,086,744 - OKFHMN_21020 0.88 -0.3 4,086,744 - OKFHMN_21020 0.88 +0.1 4,086,844 + -2.6 4,086,913 - -0.2 4,086,951 - -0.3 4,086,979 + -0.7 4,087,003 - +1.4 4,087,003 - +0.7 4,087,003 - -1.2
Or see this region's nucleotide sequence