Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqaB and yqaA overlap by 4 nucleotides yqaA and gshA are separated by 72 nucleotides gshA and luxS are separated by 149 nucleotides luxS and emrB are separated by 63 nucleotides
OKFHMN_20750: yqaB - fructose-1-phosphate/6-phosphogluconate phosphatase, at 4,034,938 to 4,035,504
yqaB
OKFHMN_20755: yqaA - Inner membrane protein YqaA, at 4,035,501 to 4,035,929
yqaA
OKFHMN_20760: gshA - glutamate--cysteine ligase, at 4,036,002 to 4,037,558
gshA
OKFHMN_20770: luxS - S-ribosylhomocysteine lyase, at 4,037,708 to 4,038,223
luxS
OKFHMN_20775: emrB - multidrug efflux MFS transporter permease subunit EmrB, at 4,038,287 to 4,039,825
emrB
Position (kb) 4036
4037
4038 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4035.026 kb on + strand, within yqaB at 4035.029 kb on + strand, within yqaB at 4035.030 kb on - strand, within yqaB at 4035.180 kb on + strand, within yqaB at 4035.555 kb on - strand, within yqaA at 4035.559 kb on + strand, within yqaA at 4035.559 kb on + strand, within yqaA at 4035.560 kb on - strand, within yqaA at 4035.705 kb on - strand, within yqaA at 4035.751 kb on - strand, within yqaA at 4035.766 kb on + strand, within yqaA at 4035.769 kb on + strand, within yqaA at 4035.799 kb on + strand, within yqaA at 4035.874 kb on + strand, within yqaA at 4035.928 kb on - strand at 4035.933 kb on + strand at 4035.934 kb on - strand at 4035.945 kb on + strand at 4035.945 kb on + strand at 4035.957 kb on + strand at 4035.964 kb on - strand at 4036.101 kb on - strand at 4036.163 kb on + strand, within gshA at 4036.235 kb on + strand, within gshA at 4036.236 kb on - strand, within gshA at 4036.236 kb on - strand, within gshA at 4036.266 kb on + strand, within gshA at 4036.269 kb on - strand, within gshA at 4036.306 kb on + strand, within gshA at 4036.306 kb on + strand, within gshA at 4036.310 kb on + strand, within gshA at 4036.320 kb on + strand, within gshA at 4036.320 kb on + strand, within gshA at 4036.320 kb on + strand, within gshA at 4036.321 kb on - strand, within gshA at 4036.357 kb on - strand, within gshA at 4036.517 kb on + strand, within gshA at 4036.560 kb on + strand, within gshA at 4036.613 kb on - strand, within gshA at 4036.677 kb on + strand, within gshA at 4036.677 kb on + strand, within gshA at 4036.677 kb on + strand, within gshA at 4036.677 kb on + strand, within gshA at 4036.678 kb on - strand, within gshA at 4036.680 kb on + strand, within gshA at 4036.680 kb on + strand, within gshA at 4036.681 kb on - strand, within gshA at 4036.722 kb on + strand, within gshA at 4036.755 kb on - strand, within gshA at 4036.900 kb on - strand, within gshA at 4037.026 kb on + strand, within gshA at 4037.027 kb on - strand, within gshA at 4037.357 kb on - strand, within gshA at 4037.363 kb on + strand, within gshA at 4037.417 kb on + strand at 4037.467 kb on + strand at 4037.718 kb on + strand at 4037.719 kb on - strand at 4037.719 kb on - strand at 4037.719 kb on - strand at 4037.896 kb on + strand, within luxS at 4037.896 kb on + strand, within luxS at 4037.912 kb on - strand, within luxS at 4037.969 kb on + strand, within luxS at 4037.971 kb on + strand, within luxS at 4038.099 kb on - strand, within luxS at 4038.233 kb on + strand at 4038.246 kb on - strand at 4038.278 kb on + strand at 4038.279 kb on - strand at 4038.279 kb on - strand at 4038.285 kb on - strand at 4038.285 kb on - strand at 4038.486 kb on + strand, within emrB at 4038.487 kb on - strand, within emrB
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,035,026 + yqaB OKFHMN_20750 0.16 -0.3 4,035,029 + yqaB OKFHMN_20750 0.16 +1.2 4,035,030 - yqaB OKFHMN_20750 0.16 -0.7 4,035,180 + yqaB OKFHMN_20750 0.43 -0.1 4,035,555 - yqaA OKFHMN_20755 0.13 -0.1 4,035,559 + yqaA OKFHMN_20755 0.14 -2.4 4,035,559 + yqaA OKFHMN_20755 0.14 +0.7 4,035,560 - yqaA OKFHMN_20755 0.14 +0.2 4,035,705 - yqaA OKFHMN_20755 0.48 -2.2 4,035,751 - yqaA OKFHMN_20755 0.58 +0.2 4,035,766 + yqaA OKFHMN_20755 0.62 +0.8 4,035,769 + yqaA OKFHMN_20755 0.62 -1.1 4,035,799 + yqaA OKFHMN_20755 0.69 -1.1 4,035,874 + yqaA OKFHMN_20755 0.87 +0.4 4,035,928 - -0.8 4,035,933 + -0.2 4,035,934 - -0.9 4,035,945 + -0.3 4,035,945 + +0.5 4,035,957 + -0.6 4,035,964 - -0.4 4,036,101 - +0.1 4,036,163 + gshA OKFHMN_20760 0.10 -2.4 4,036,235 + gshA OKFHMN_20760 0.15 +0.0 4,036,236 - gshA OKFHMN_20760 0.15 -2.0 4,036,236 - gshA OKFHMN_20760 0.15 -0.6 4,036,266 + gshA OKFHMN_20760 0.17 -2.8 4,036,269 - gshA OKFHMN_20760 0.17 +0.3 4,036,306 + gshA OKFHMN_20760 0.20 -1.9 4,036,306 + gshA OKFHMN_20760 0.20 +0.1 4,036,310 + gshA OKFHMN_20760 0.20 -0.1 4,036,320 + gshA OKFHMN_20760 0.20 -1.5 4,036,320 + gshA OKFHMN_20760 0.20 +0.2 4,036,320 + gshA OKFHMN_20760 0.20 -1.7 4,036,321 - gshA OKFHMN_20760 0.20 +0.4 4,036,357 - gshA OKFHMN_20760 0.23 -1.3 4,036,517 + gshA OKFHMN_20760 0.33 +1.7 4,036,560 + gshA OKFHMN_20760 0.36 -2.1 4,036,613 - gshA OKFHMN_20760 0.39 -1.2 4,036,677 + gshA OKFHMN_20760 0.43 -0.4 4,036,677 + gshA OKFHMN_20760 0.43 +0.8 4,036,677 + gshA OKFHMN_20760 0.43 +0.1 4,036,677 + gshA OKFHMN_20760 0.43 +0.9 4,036,678 - gshA OKFHMN_20760 0.43 +0.7 4,036,680 + gshA OKFHMN_20760 0.44 +1.4 4,036,680 + gshA OKFHMN_20760 0.44 +1.1 4,036,681 - gshA OKFHMN_20760 0.44 -3.9 4,036,722 + gshA OKFHMN_20760 0.46 -0.3 4,036,755 - gshA OKFHMN_20760 0.48 +0.9 4,036,900 - gshA OKFHMN_20760 0.58 +1.0 4,037,026 + gshA OKFHMN_20760 0.66 -0.2 4,037,027 - gshA OKFHMN_20760 0.66 -0.5 4,037,357 - gshA OKFHMN_20760 0.87 +1.6 4,037,363 + gshA OKFHMN_20760 0.87 -0.6 4,037,417 + -0.1 4,037,467 + -0.2 4,037,718 + +0.3 4,037,719 - +0.5 4,037,719 - -0.8 4,037,719 - +0.4 4,037,896 + luxS OKFHMN_20770 0.36 +1.1 4,037,896 + luxS OKFHMN_20770 0.36 +1.2 4,037,912 - luxS OKFHMN_20770 0.40 +0.6 4,037,969 + luxS OKFHMN_20770 0.51 -0.6 4,037,971 + luxS OKFHMN_20770 0.51 +0.1 4,038,099 - luxS OKFHMN_20770 0.76 +0.2 4,038,233 + -0.6 4,038,246 - -3.2 4,038,278 + +0.3 4,038,279 - -0.6 4,038,279 - -0.8 4,038,285 - -0.5 4,038,285 - +0.9 4,038,486 + emrB OKFHMN_20775 0.13 -0.3 4,038,487 - emrB OKFHMN_20775 0.13 -0.5
Or see this region's nucleotide sequence