Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygcS and ygcS overlap by 4 nucleotides ygcS and ygcR overlap by 23 nucleotides ygcR and fixB overlap by 4 nucleotides fixB and OKFHMN_20345 are separated by 15 nucleotides
OKFHMN_20325: ygcS - Inner membrane metabolite transport protein YgcS, at 3,958,330 to 3,959,535
ygcS
OKFHMN_20330: ygcS - Inner membrane metabolite transport protein YgcS, at 3,959,532 to 3,959,738
ygcS
OKFHMN_20335: ygcR - Putative electron transfer flavoprotein subunit YgcR, at 3,959,716 to 3,960,495
ygcR
OKFHMN_20340: fixB - electron transfer flavoprotein, at 3,960,492 to 3,961,061
fixB
OKFHMN_20345: OKFHMN_20345 - Electron transfer flavoprotein subunit YgcQ, at 3,961,077 to 3,961,352
_20345
Position (kb) 3959
3960
3961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3958.775 kb on - strand, within ygcS at 3958.781 kb on + strand, within ygcS at 3958.781 kb on + strand, within ygcS at 3958.862 kb on + strand, within ygcS at 3958.867 kb on + strand, within ygcS at 3958.867 kb on + strand, within ygcS at 3958.868 kb on - strand, within ygcS at 3958.868 kb on - strand, within ygcS at 3958.868 kb on - strand, within ygcS at 3958.966 kb on - strand, within ygcS at 3958.966 kb on - strand, within ygcS at 3959.104 kb on - strand, within ygcS at 3959.229 kb on + strand, within ygcS at 3959.229 kb on + strand, within ygcS at 3959.229 kb on + strand, within ygcS at 3959.268 kb on + strand, within ygcS at 3959.304 kb on - strand, within ygcS at 3959.375 kb on + strand, within ygcS at 3959.456 kb on + strand at 3959.608 kb on + strand, within ygcS at 3959.647 kb on + strand, within ygcS at 3959.647 kb on + strand, within ygcS at 3959.982 kb on - strand, within ygcR at 3960.210 kb on + strand, within ygcR at 3960.210 kb on + strand, within ygcR at 3960.458 kb on + strand at 3960.573 kb on - strand, within fixB at 3960.592 kb on + strand, within fixB at 3960.776 kb on - strand, within fixB at 3960.842 kb on - strand, within fixB at 3960.842 kb on - strand, within fixB at 3960.952 kb on + strand, within fixB at 3960.952 kb on + strand, within fixB at 3960.953 kb on - strand, within fixB at 3960.953 kb on - strand, within fixB at 3961.084 kb on - strand at 3961.169 kb on + strand, within OKFHMN_20345 at 3961.202 kb on - strand, within OKFHMN_20345 at 3961.220 kb on + strand, within OKFHMN_20345 at 3961.241 kb on + strand, within OKFHMN_20345 at 3961.398 kb on + strand at 3961.399 kb on - strand at 3961.407 kb on + strand at 3961.417 kb on + strand at 3961.461 kb on + strand at 3961.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,958,775 - ygcS OKFHMN_20325 0.37 -3.1 3,958,781 + ygcS OKFHMN_20325 0.37 +0.0 3,958,781 + ygcS OKFHMN_20325 0.37 -0.2 3,958,862 + ygcS OKFHMN_20325 0.44 +0.6 3,958,867 + ygcS OKFHMN_20325 0.45 +0.3 3,958,867 + ygcS OKFHMN_20325 0.45 +0.1 3,958,868 - ygcS OKFHMN_20325 0.45 -1.0 3,958,868 - ygcS OKFHMN_20325 0.45 +0.6 3,958,868 - ygcS OKFHMN_20325 0.45 +0.0 3,958,966 - ygcS OKFHMN_20325 0.53 -0.4 3,958,966 - ygcS OKFHMN_20325 0.53 +0.5 3,959,104 - ygcS OKFHMN_20325 0.64 +0.2 3,959,229 + ygcS OKFHMN_20325 0.75 +2.3 3,959,229 + ygcS OKFHMN_20325 0.75 +0.5 3,959,229 + ygcS OKFHMN_20325 0.75 -0.4 3,959,268 + ygcS OKFHMN_20325 0.78 +0.2 3,959,304 - ygcS OKFHMN_20325 0.81 -0.1 3,959,375 + ygcS OKFHMN_20325 0.87 -0.1 3,959,456 + +0.1 3,959,608 + ygcS OKFHMN_20330 0.37 -1.3 3,959,647 + ygcS OKFHMN_20330 0.56 +0.7 3,959,647 + ygcS OKFHMN_20330 0.56 +0.6 3,959,982 - ygcR OKFHMN_20335 0.34 +0.5 3,960,210 + ygcR OKFHMN_20335 0.63 -2.7 3,960,210 + ygcR OKFHMN_20335 0.63 +0.2 3,960,458 + -0.1 3,960,573 - fixB OKFHMN_20340 0.14 -1.0 3,960,592 + fixB OKFHMN_20340 0.18 +0.2 3,960,776 - fixB OKFHMN_20340 0.50 +2.4 3,960,842 - fixB OKFHMN_20340 0.61 -0.4 3,960,842 - fixB OKFHMN_20340 0.61 +0.6 3,960,952 + fixB OKFHMN_20340 0.81 -0.4 3,960,952 + fixB OKFHMN_20340 0.81 +0.1 3,960,953 - fixB OKFHMN_20340 0.81 -0.1 3,960,953 - fixB OKFHMN_20340 0.81 +0.4 3,961,084 - +0.8 3,961,169 + OKFHMN_20345 0.33 +1.6 3,961,202 - OKFHMN_20345 0.45 -0.4 3,961,220 + OKFHMN_20345 0.52 +0.1 3,961,241 + OKFHMN_20345 0.59 -0.3 3,961,398 + -0.1 3,961,399 - +0.4 3,961,407 + -0.1 3,961,417 + +0.3 3,961,461 + +0.1 3,961,487 + -1.6
Or see this region's nucleotide sequence