Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20155

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucI and fucP are separated by 32 nucleotidesfucP and fucA are separated by 546 nucleotides OKFHMN_20150: fucI - L-fucose isomerase, at 3,916,631 to 3,918,406 fucI OKFHMN_20155: fucP - L-fucose:H+ symporter permease, at 3,918,439 to 3,919,755 fucP OKFHMN_20160: fucA - L-fuculose-phosphate aldolase, at 3,920,302 to 3,920,949 fucA Position (kb) 3918 3919 3920Strain fitness (log2 ratio) -3 -2 -1 0 1at 3917.532 kb on + strand, within fucIat 3917.599 kb on + strand, within fucIat 3917.662 kb on - strand, within fucIat 3917.836 kb on + strand, within fucIat 3917.878 kb on - strand, within fucIat 3917.991 kb on + strand, within fucIat 3918.133 kb on - strand, within fucIat 3918.167 kb on + strand, within fucIat 3918.168 kb on - strand, within fucIat 3918.389 kb on + strandat 3918.407 kb on + strandat 3918.444 kb on + strandat 3918.445 kb on - strandat 3918.445 kb on - strandat 3918.612 kb on - strand, within fucPat 3918.612 kb on - strand, within fucPat 3918.676 kb on - strand, within fucPat 3918.676 kb on - strand, within fucPat 3918.703 kb on + strand, within fucPat 3918.857 kb on + strand, within fucPat 3918.858 kb on - strand, within fucPat 3918.899 kb on - strand, within fucPat 3918.918 kb on - strand, within fucPat 3918.948 kb on - strand, within fucPat 3918.965 kb on - strand, within fucPat 3918.965 kb on - strand, within fucPat 3919.119 kb on + strand, within fucPat 3919.119 kb on + strand, within fucPat 3919.119 kb on + strand, within fucPat 3919.120 kb on - strand, within fucPat 3919.120 kb on - strand, within fucPat 3919.121 kb on + strand, within fucPat 3919.122 kb on - strand, within fucPat 3919.122 kb on - strand, within fucPat 3919.142 kb on - strand, within fucPat 3919.142 kb on - strand, within fucPat 3919.587 kb on + strand, within fucPat 3919.756 kb on - strandat 3919.766 kb on + strandat 3919.780 kb on + strandat 3919.781 kb on - strandat 3920.427 kb on + strand, within fucAat 3920.427 kb on + strand, within fucAat 3920.463 kb on + strand, within fucAat 3920.533 kb on - strand, within fucAat 3920.542 kb on + strand, within fucAat 3920.638 kb on + strand, within fucAat 3920.638 kb on + strand, within fucAat 3920.638 kb on + strand, within fucA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,917,532 + fucI OKFHMN_20150 0.51 +0.3
3,917,599 + fucI OKFHMN_20150 0.55 +0.3
3,917,662 - fucI OKFHMN_20150 0.58 -0.2
3,917,836 + fucI OKFHMN_20150 0.68 +0.4
3,917,878 - fucI OKFHMN_20150 0.70 +0.3
3,917,991 + fucI OKFHMN_20150 0.77 +0.4
3,918,133 - fucI OKFHMN_20150 0.85 -0.2
3,918,167 + fucI OKFHMN_20150 0.86 -1.4
3,918,168 - fucI OKFHMN_20150 0.87 -0.5
3,918,389 + +0.2
3,918,407 + +0.7
3,918,444 + +0.3
3,918,445 - +1.1
3,918,445 - -0.1
3,918,612 - fucP OKFHMN_20155 0.13 +0.2
3,918,612 - fucP OKFHMN_20155 0.13 -0.8
3,918,676 - fucP OKFHMN_20155 0.18 +0.3
3,918,676 - fucP OKFHMN_20155 0.18 -0.2
3,918,703 + fucP OKFHMN_20155 0.20 -0.2
3,918,857 + fucP OKFHMN_20155 0.32 +0.8
3,918,858 - fucP OKFHMN_20155 0.32 +0.3
3,918,899 - fucP OKFHMN_20155 0.35 +0.9
3,918,918 - fucP OKFHMN_20155 0.36 -0.2
3,918,948 - fucP OKFHMN_20155 0.39 +1.3
3,918,965 - fucP OKFHMN_20155 0.40 -0.7
3,918,965 - fucP OKFHMN_20155 0.40 +0.7
3,919,119 + fucP OKFHMN_20155 0.52 -0.9
3,919,119 + fucP OKFHMN_20155 0.52 +0.5
3,919,119 + fucP OKFHMN_20155 0.52 +0.2
3,919,120 - fucP OKFHMN_20155 0.52 +0.9
3,919,120 - fucP OKFHMN_20155 0.52 +0.1
3,919,121 + fucP OKFHMN_20155 0.52 -0.9
3,919,122 - fucP OKFHMN_20155 0.52 -0.4
3,919,122 - fucP OKFHMN_20155 0.52 +0.2
3,919,142 - fucP OKFHMN_20155 0.53 -0.1
3,919,142 - fucP OKFHMN_20155 0.53 +0.3
3,919,587 + fucP OKFHMN_20155 0.87 -2.9
3,919,756 - +0.0
3,919,766 + -0.3
3,919,780 + +0.4
3,919,781 - +0.2
3,920,427 + fucA OKFHMN_20160 0.19 -0.9
3,920,427 + fucA OKFHMN_20160 0.19 -0.3
3,920,463 + fucA OKFHMN_20160 0.25 +0.3
3,920,533 - fucA OKFHMN_20160 0.36 -0.7
3,920,542 + fucA OKFHMN_20160 0.37 +0.2
3,920,638 + fucA OKFHMN_20160 0.52 +0.1
3,920,638 + fucA OKFHMN_20160 0.52 -0.5
3,920,638 + fucA OKFHMN_20160 0.52 +0.4

Or see this region's nucleotide sequence