Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19745

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntaraC and sctC overlap by 4 nucleotidessctC and OKFHMN_19750 are separated by 4 nucleotides OKFHMN_19740: araC - AraC family transcriptional regulator, at 3,841,508 to 3,842,257 araC OKFHMN_19745: sctC - type III secretion system outer membrane ring subunit SctC, at 3,842,254 to 3,843,957 sctC OKFHMN_19750: OKFHMN_19750 - YopN/LcrE/InvE/MxiC type III secretion system gatekeeper, at 3,843,962 to 3,845,107 _19750 Position (kb) 3842 3843 3844Strain fitness (log2 ratio) -1 0 1at 3841.312 kb on - strandat 3841.379 kb on + strandat 3841.677 kb on + strand, within araCat 3841.708 kb on - strand, within araCat 3841.762 kb on - strand, within araCat 3841.958 kb on - strand, within araCat 3842.405 kb on - strandat 3842.427 kb on + strand, within sctCat 3842.428 kb on - strand, within sctCat 3842.482 kb on + strand, within sctCat 3842.521 kb on - strand, within sctCat 3842.856 kb on + strand, within sctCat 3843.148 kb on - strand, within sctCat 3843.194 kb on + strand, within sctCat 3843.199 kb on - strand, within sctCat 3843.387 kb on - strand, within sctCat 3843.411 kb on - strand, within sctCat 3843.495 kb on + strand, within sctCat 3843.620 kb on + strand, within sctCat 3843.829 kb on - strandat 3843.991 kb on - strandat 3844.030 kb on + strandat 3844.118 kb on - strand, within OKFHMN_19750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
3,841,312 - +0.3
3,841,379 + -0.1
3,841,677 + araC OKFHMN_19740 0.23 -0.4
3,841,708 - araC OKFHMN_19740 0.27 +1.2
3,841,762 - araC OKFHMN_19740 0.34 +0.9
3,841,958 - araC OKFHMN_19740 0.60 +0.1
3,842,405 - -0.6
3,842,427 + sctC OKFHMN_19745 0.10 -0.1
3,842,428 - sctC OKFHMN_19745 0.10 -1.2
3,842,482 + sctC OKFHMN_19745 0.13 +0.2
3,842,521 - sctC OKFHMN_19745 0.16 +0.8
3,842,856 + sctC OKFHMN_19745 0.35 +0.1
3,843,148 - sctC OKFHMN_19745 0.52 -0.4
3,843,194 + sctC OKFHMN_19745 0.55 -1.1
3,843,199 - sctC OKFHMN_19745 0.55 -0.5
3,843,387 - sctC OKFHMN_19745 0.66 -0.3
3,843,411 - sctC OKFHMN_19745 0.68 +0.7
3,843,495 + sctC OKFHMN_19745 0.73 -0.1
3,843,620 + sctC OKFHMN_19745 0.80 -0.4
3,843,829 - +0.9
3,843,991 - -0.9
3,844,030 + +1.3
3,844,118 - OKFHMN_19750 0.14 +1.3

Or see this region's nucleotide sequence