Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19690

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdpaL and ygeW are separated by 57 nucleotidesygeW and uacR are separated by 478 nucleotides OKFHMN_19685: dpaL - diaminopropionate ammonia-lyase, at 3,829,354 to 3,830,550 dpaL OKFHMN_19690: ygeW - knotted carbamoyltransferase YgeW, at 3,830,608 to 3,831,795 ygeW OKFHMN_19695: uacR - Putative uric acid sigma-54-dependent transcriptional regulator UacR, at 3,832,274 to 3,834,052 uacR Position (kb) 3830 3831 3832Strain fitness (log2 ratio) -2 -1 0 1 2at 3829.641 kb on + strand, within dpaLat 3829.755 kb on + strand, within dpaLat 3829.806 kb on + strand, within dpaLat 3829.806 kb on + strand, within dpaLat 3829.967 kb on + strand, within dpaLat 3829.967 kb on + strand, within dpaLat 3829.968 kb on - strand, within dpaLat 3829.968 kb on - strand, within dpaLat 3829.990 kb on + strand, within dpaLat 3829.991 kb on - strand, within dpaLat 3830.055 kb on + strand, within dpaLat 3830.055 kb on + strand, within dpaLat 3830.129 kb on + strand, within dpaLat 3830.130 kb on - strand, within dpaLat 3830.288 kb on - strand, within dpaLat 3830.288 kb on - strand, within dpaLat 3830.304 kb on - strand, within dpaLat 3830.434 kb on + strandat 3830.550 kb on + strandat 3830.550 kb on + strandat 3830.550 kb on + strandat 3830.550 kb on + strandat 3830.550 kb on + strandat 3830.550 kb on + strandat 3830.550 kb on + strandat 3830.551 kb on - strandat 3830.551 kb on - strandat 3830.700 kb on + strandat 3830.700 kb on + strandat 3830.701 kb on - strandat 3830.703 kb on - strandat 3830.703 kb on - strandat 3830.703 kb on - strandat 3830.703 kb on - strandat 3830.703 kb on - strandat 3830.726 kb on + strandat 3830.726 kb on + strandat 3830.726 kb on + strandat 3830.731 kb on - strand, within ygeWat 3830.742 kb on - strand, within ygeWat 3830.819 kb on + strand, within ygeWat 3830.976 kb on - strand, within ygeWat 3830.976 kb on - strand, within ygeWat 3831.066 kb on + strand, within ygeWat 3831.066 kb on + strand, within ygeWat 3831.066 kb on + strand, within ygeWat 3831.067 kb on - strand, within ygeWat 3831.067 kb on - strand, within ygeWat 3831.088 kb on + strand, within ygeWat 3831.089 kb on - strand, within ygeWat 3831.089 kb on - strand, within ygeWat 3831.091 kb on + strand, within ygeWat 3831.198 kb on - strand, within ygeWat 3831.198 kb on - strand, within ygeWat 3831.271 kb on + strand, within ygeWat 3831.313 kb on - strand, within ygeWat 3831.366 kb on - strand, within ygeWat 3831.399 kb on + strand, within ygeWat 3831.400 kb on - strand, within ygeWat 3831.401 kb on + strand, within ygeWat 3831.402 kb on - strand, within ygeWat 3831.422 kb on + strand, within ygeWat 3831.422 kb on + strand, within ygeWat 3831.422 kb on + strand, within ygeWat 3831.423 kb on - strand, within ygeWat 3831.423 kb on - strand, within ygeWat 3831.423 kb on - strand, within ygeWat 3831.423 kb on - strand, within ygeWat 3831.468 kb on + strand, within ygeWat 3831.468 kb on + strand, within ygeWat 3831.613 kb on + strand, within ygeWat 3831.613 kb on + strand, within ygeWat 3831.771 kb on + strandat 3832.204 kb on + strandat 3832.205 kb on - strandat 3832.267 kb on + strandat 3832.679 kb on + strand, within uacR

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
3,829,641 + dpaL OKFHMN_19685 0.24 +0.4
3,829,755 + dpaL OKFHMN_19685 0.34 +0.2
3,829,806 + dpaL OKFHMN_19685 0.38 -1.0
3,829,806 + dpaL OKFHMN_19685 0.38 -0.0
3,829,967 + dpaL OKFHMN_19685 0.51 -0.1
3,829,967 + dpaL OKFHMN_19685 0.51 -0.0
3,829,968 - dpaL OKFHMN_19685 0.51 -1.2
3,829,968 - dpaL OKFHMN_19685 0.51 +0.9
3,829,990 + dpaL OKFHMN_19685 0.53 +0.5
3,829,991 - dpaL OKFHMN_19685 0.53 +0.4
3,830,055 + dpaL OKFHMN_19685 0.59 +1.1
3,830,055 + dpaL OKFHMN_19685 0.59 -0.4
3,830,129 + dpaL OKFHMN_19685 0.65 +0.2
3,830,130 - dpaL OKFHMN_19685 0.65 +0.7
3,830,288 - dpaL OKFHMN_19685 0.78 +0.1
3,830,288 - dpaL OKFHMN_19685 0.78 -0.5
3,830,304 - dpaL OKFHMN_19685 0.79 +0.4
3,830,434 + -0.3
3,830,550 + +0.4
3,830,550 + +1.1
3,830,550 + -0.5
3,830,550 + +0.6
3,830,550 + -1.1
3,830,550 + +1.5
3,830,550 + +1.4
3,830,551 - +0.2
3,830,551 - -0.9
3,830,700 + +0.5
3,830,700 + -0.5
3,830,701 - -0.4
3,830,703 - -0.1
3,830,703 - -0.5
3,830,703 - -1.0
3,830,703 - +0.4
3,830,703 - +0.4
3,830,726 + +0.3
3,830,726 + +0.5
3,830,726 + +0.8
3,830,731 - ygeW OKFHMN_19690 0.10 -0.3
3,830,742 - ygeW OKFHMN_19690 0.11 -0.1
3,830,819 + ygeW OKFHMN_19690 0.18 -0.7
3,830,976 - ygeW OKFHMN_19690 0.31 +0.6
3,830,976 - ygeW OKFHMN_19690 0.31 -0.2
3,831,066 + ygeW OKFHMN_19690 0.39 +1.8
3,831,066 + ygeW OKFHMN_19690 0.39 -2.0
3,831,066 + ygeW OKFHMN_19690 0.39 -0.6
3,831,067 - ygeW OKFHMN_19690 0.39 -0.5
3,831,067 - ygeW OKFHMN_19690 0.39 -0.4
3,831,088 + ygeW OKFHMN_19690 0.40 -0.2
3,831,089 - ygeW OKFHMN_19690 0.40 +2.1
3,831,089 - ygeW OKFHMN_19690 0.40 -1.9
3,831,091 + ygeW OKFHMN_19690 0.41 -0.0
3,831,198 - ygeW OKFHMN_19690 0.50 +0.2
3,831,198 - ygeW OKFHMN_19690 0.50 -0.1
3,831,271 + ygeW OKFHMN_19690 0.56 -0.1
3,831,313 - ygeW OKFHMN_19690 0.59 -2.2
3,831,366 - ygeW OKFHMN_19690 0.64 -0.2
3,831,399 + ygeW OKFHMN_19690 0.67 +0.6
3,831,400 - ygeW OKFHMN_19690 0.67 +0.9
3,831,401 + ygeW OKFHMN_19690 0.67 -0.7
3,831,402 - ygeW OKFHMN_19690 0.67 -0.3
3,831,422 + ygeW OKFHMN_19690 0.69 +0.6
3,831,422 + ygeW OKFHMN_19690 0.69 +0.4
3,831,422 + ygeW OKFHMN_19690 0.69 +0.7
3,831,423 - ygeW OKFHMN_19690 0.69 +0.5
3,831,423 - ygeW OKFHMN_19690 0.69 -1.1
3,831,423 - ygeW OKFHMN_19690 0.69 -0.4
3,831,423 - ygeW OKFHMN_19690 0.69 +0.3
3,831,468 + ygeW OKFHMN_19690 0.72 +0.4
3,831,468 + ygeW OKFHMN_19690 0.72 +0.2
3,831,613 + ygeW OKFHMN_19690 0.85 +0.7
3,831,613 + ygeW OKFHMN_19690 0.85 +0.6
3,831,771 + +0.4
3,832,204 + +1.0
3,832,205 - +0.5
3,832,267 + +0.1
3,832,679 + uacR OKFHMN_19695 0.23 -0.9

Or see this region's nucleotide sequence