Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19205

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmutY and trmB are separated by 160 nucleotidestrmB and yggL overlap by 1 nucleotidesyggL and yggN are separated by 183 nucleotides OKFHMN_19200: mutY - A/G-specific adenine glycosylase, at 3,730,732 to 3,731,784 mutY OKFHMN_19205: trmB - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 3,731,945 to 3,732,664 trmB OKFHMN_19210: yggL - Uncharacterized protein YggL, at 3,732,664 to 3,732,990 yggL OKFHMN_19215: yggN - Uncharacterized protein YggN, at 3,733,174 to 3,733,893 yggN Position (kb) 3731 3732 3733Strain fitness (log2 ratio) -2 -1 0 1at 3731.012 kb on - strand, within mutYat 3731.072 kb on - strand, within mutYat 3731.143 kb on - strand, within mutYat 3731.143 kb on - strand, within mutYat 3731.143 kb on - strand, within mutYat 3731.143 kb on - strand, within mutYat 3731.160 kb on + strand, within mutYat 3731.160 kb on + strand, within mutYat 3731.161 kb on - strand, within mutYat 3731.161 kb on - strand, within mutYat 3731.339 kb on + strand, within mutYat 3731.339 kb on + strand, within mutYat 3731.340 kb on - strand, within mutYat 3731.686 kb on + strandat 3731.686 kb on + strandat 3731.687 kb on - strandat 3731.693 kb on + strandat 3731.736 kb on - strandat 3731.744 kb on + strandat 3731.841 kb on + strandat 3731.870 kb on + strandat 3731.893 kb on - strandat 3732.008 kb on - strandat 3732.065 kb on + strand, within trmBat 3732.066 kb on - strand, within trmBat 3732.101 kb on - strand, within trmBat 3732.279 kb on + strand, within trmBat 3732.280 kb on - strand, within trmBat 3732.325 kb on + strand, within trmBat 3732.326 kb on - strand, within trmBat 3732.326 kb on - strand, within trmBat 3732.505 kb on + strand, within trmBat 3732.505 kb on + strand, within trmBat 3732.505 kb on + strand, within trmBat 3732.505 kb on + strand, within trmBat 3732.505 kb on + strand, within trmBat 3732.505 kb on + strand, within trmBat 3732.506 kb on - strand, within trmBat 3732.527 kb on - strand, within trmBat 3732.563 kb on + strand, within trmBat 3732.563 kb on + strand, within trmBat 3732.563 kb on + strand, within trmBat 3732.563 kb on + strand, within trmBat 3732.564 kb on - strand, within trmBat 3732.642 kb on + strandat 3732.642 kb on + strandat 3732.643 kb on - strandat 3732.643 kb on - strandat 3732.760 kb on - strand, within yggLat 3732.953 kb on + strand, within yggLat 3733.040 kb on + strandat 3733.040 kb on + strandat 3733.041 kb on - strandat 3733.050 kb on - strandat 3733.087 kb on + strandat 3733.173 kb on + strandat 3733.173 kb on + strandat 3733.360 kb on + strand, within yggNat 3733.412 kb on + strand, within yggNat 3733.412 kb on + strand, within yggNat 3733.412 kb on + strand, within yggNat 3733.413 kb on - strand, within yggNat 3733.413 kb on - strand, within yggNat 3733.416 kb on + strand, within yggNat 3733.416 kb on + strand, within yggNat 3733.417 kb on - strand, within yggNat 3733.611 kb on + strand, within yggNat 3733.612 kb on - strand, within yggNat 3733.612 kb on - strand, within yggN

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,731,012 - mutY OKFHMN_19200 0.27 -0.0
3,731,072 - mutY OKFHMN_19200 0.32 +0.1
3,731,143 - mutY OKFHMN_19200 0.39 +0.3
3,731,143 - mutY OKFHMN_19200 0.39 -0.8
3,731,143 - mutY OKFHMN_19200 0.39 -0.9
3,731,143 - mutY OKFHMN_19200 0.39 +0.1
3,731,160 + mutY OKFHMN_19200 0.41 -0.0
3,731,160 + mutY OKFHMN_19200 0.41 +0.6
3,731,161 - mutY OKFHMN_19200 0.41 -0.4
3,731,161 - mutY OKFHMN_19200 0.41 -0.2
3,731,339 + mutY OKFHMN_19200 0.58 +0.0
3,731,339 + mutY OKFHMN_19200 0.58 -0.1
3,731,340 - mutY OKFHMN_19200 0.58 -0.8
3,731,686 + +0.3
3,731,686 + -1.8
3,731,687 - +0.8
3,731,693 + +0.0
3,731,736 - +0.3
3,731,744 + +0.7
3,731,841 + +0.2
3,731,870 + -0.3
3,731,893 - +0.8
3,732,008 - +0.0
3,732,065 + trmB OKFHMN_19205 0.17 +0.2
3,732,066 - trmB OKFHMN_19205 0.17 -0.2
3,732,101 - trmB OKFHMN_19205 0.22 +0.6
3,732,279 + trmB OKFHMN_19205 0.46 -0.2
3,732,280 - trmB OKFHMN_19205 0.47 +0.3
3,732,325 + trmB OKFHMN_19205 0.53 -0.1
3,732,326 - trmB OKFHMN_19205 0.53 -0.9
3,732,326 - trmB OKFHMN_19205 0.53 -0.5
3,732,505 + trmB OKFHMN_19205 0.78 +0.8
3,732,505 + trmB OKFHMN_19205 0.78 +0.4
3,732,505 + trmB OKFHMN_19205 0.78 +0.3
3,732,505 + trmB OKFHMN_19205 0.78 +0.2
3,732,505 + trmB OKFHMN_19205 0.78 +0.1
3,732,505 + trmB OKFHMN_19205 0.78 +0.1
3,732,506 - trmB OKFHMN_19205 0.78 -0.0
3,732,527 - trmB OKFHMN_19205 0.81 +0.9
3,732,563 + trmB OKFHMN_19205 0.86 -0.2
3,732,563 + trmB OKFHMN_19205 0.86 +0.7
3,732,563 + trmB OKFHMN_19205 0.86 +0.5
3,732,563 + trmB OKFHMN_19205 0.86 -0.5
3,732,564 - trmB OKFHMN_19205 0.86 -0.5
3,732,642 + -0.0
3,732,642 + -1.7
3,732,643 - +0.3
3,732,643 - +0.3
3,732,760 - yggL OKFHMN_19210 0.29 -0.5
3,732,953 + yggL OKFHMN_19210 0.88 -0.2
3,733,040 + +0.5
3,733,040 + -0.5
3,733,041 - -0.2
3,733,050 - -1.2
3,733,087 + +0.3
3,733,173 + +0.2
3,733,173 + -1.3
3,733,360 + yggN OKFHMN_19215 0.26 +0.2
3,733,412 + yggN OKFHMN_19215 0.33 +0.5
3,733,412 + yggN OKFHMN_19215 0.33 +0.8
3,733,412 + yggN OKFHMN_19215 0.33 -0.6
3,733,413 - yggN OKFHMN_19215 0.33 +0.2
3,733,413 - yggN OKFHMN_19215 0.33 +0.2
3,733,416 + yggN OKFHMN_19215 0.34 +0.3
3,733,416 + yggN OKFHMN_19215 0.34 +0.1
3,733,417 - yggN OKFHMN_19215 0.34 +0.8
3,733,611 + yggN OKFHMN_19215 0.61 +0.5
3,733,612 - yggN OKFHMN_19215 0.61 -0.3
3,733,612 - yggN OKFHMN_19215 0.61 +0.0

Or see this region's nucleotide sequence