Strain Fitness in Escherichia coli ECRC100 around OKFHMN_17615

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nt23S_rrna and 5S_rrna are separated by 94 nucleotides5S_rrna and Thr_trna are separated by 14 nucleotidesThr_trna and 5S_rrna are separated by 39 nucleotides5S_rrna and yhdZ are separated by 230 nucleotidesyhdZ and yhdY are separated by 7 nucleotides OKFHMN_17600: 23S_rrna - 23S ribosomal RNA, at 3,414,609 to 3,417,511 _rrna OKFHMN_17605: 5S_rrna - 5S ribosomal RNA, at 3,417,606 to 3,417,721 _rrna OKFHMN_17610: Thr_trna - tRNA-Thr(ggt), at 3,417,736 to 3,417,811 _trna OKFHMN_17615: 5S_rrna - 5S ribosomal RNA, at 3,417,851 to 3,417,966 _rrna OKFHMN_17620: yhdZ - Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ, at 3,418,197 to 3,418,955 yhdZ OKFHMN_17625: yhdY - Inner membrane amino-acid ABC transporter permease protein YhdY, at 3,418,963 to 3,420,066 yhdY Position (kb) 3417 3418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3417.817 kb on + strandat 3417.817 kb on + strandat 3418.014 kb on - strandat 3418.014 kb on - strandat 3418.173 kb on + strandat 3418.188 kb on - strandat 3418.230 kb on - strandat 3418.242 kb on - strandat 3418.392 kb on - strand, within yhdZat 3418.467 kb on - strand, within yhdZat 3418.530 kb on - strand, within yhdZat 3418.629 kb on - strand, within yhdZat 3418.728 kb on - strand, within yhdZat 3418.916 kb on + strandat 3418.955 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
3,417,817 + -0.1
3,417,817 + +0.4
3,418,014 - +0.3
3,418,014 - -1.1
3,418,173 + +0.9
3,418,188 - +0.1
3,418,230 - -0.5
3,418,242 - -1.1
3,418,392 - yhdZ OKFHMN_17620 0.26 -0.9
3,418,467 - yhdZ OKFHMN_17620 0.36 +0.3
3,418,530 - yhdZ OKFHMN_17620 0.44 +0.8
3,418,629 - yhdZ OKFHMN_17620 0.57 +0.2
3,418,728 - yhdZ OKFHMN_17620 0.70 +2.2
3,418,916 + +0.1
3,418,955 + -2.8

Or see this region's nucleotide sequence