Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bfr and pulO overlap by 4 nucleotides pulO and rpsJ are separated by 378 nucleotides rpsJ and rplC are separated by 32 nucleotides rplC and rplD are separated by 10 nucleotides
OKFHMN_17345: bfr - bacterioferritin, at 3,385,480 to 3,385,956
bfr
OKFHMN_17350: pulO - prepilin peptidase, at 3,385,953 to 3,386,420
pulO
OKFHMN_17355: rpsJ - 30S ribosomal protein S10, at 3,386,799 to 3,387,110
rpsJ
OKFHMN_17360: rplC - 50S ribosomal protein L3, at 3,387,143 to 3,387,772
rplC
OKFHMN_17365: rplD - 50S ribosomal protein L4, at 3,387,783 to 3,388,388
rplD
Position (kb)
3386
3387
3388 Strain fitness (log2 ratio)
-2
-1
0
1 at 3385.819 kb on + strand, within bfr at 3385.819 kb on + strand, within bfr at 3385.820 kb on - strand, within bfr at 3385.820 kb on - strand, within bfr at 3385.834 kb on - strand, within bfr at 3385.905 kb on + strand, within bfr at 3385.924 kb on + strand at 3385.962 kb on + strand at 3385.962 kb on + strand at 3385.963 kb on - strand at 3385.963 kb on - strand at 3385.963 kb on - strand at 3385.986 kb on - strand at 3386.071 kb on - strand, within pulO at 3386.071 kb on - strand, within pulO at 3386.071 kb on - strand, within pulO at 3386.171 kb on - strand, within pulO at 3386.171 kb on - strand, within pulO at 3386.175 kb on + strand, within pulO at 3386.175 kb on + strand, within pulO at 3386.176 kb on - strand, within pulO at 3386.176 kb on - strand, within pulO at 3386.241 kb on - strand, within pulO at 3386.253 kb on + strand, within pulO at 3386.324 kb on + strand, within pulO at 3386.324 kb on + strand, within pulO at 3386.325 kb on - strand, within pulO at 3386.337 kb on + strand, within pulO at 3386.412 kb on - strand at 3386.412 kb on - strand at 3386.412 kb on - strand at 3386.434 kb on + strand at 3386.435 kb on - strand at 3386.457 kb on - strand at 3386.686 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,385,819 + bfr OKFHMN_17345 0.71 +0.1 3,385,819 + bfr OKFHMN_17345 0.71 -0.1 3,385,820 - bfr OKFHMN_17345 0.71 +0.2 3,385,820 - bfr OKFHMN_17345 0.71 -0.4 3,385,834 - bfr OKFHMN_17345 0.74 +0.2 3,385,905 + bfr OKFHMN_17345 0.89 +0.3 3,385,924 + +0.8 3,385,962 + -0.3 3,385,962 + +0.3 3,385,963 - +1.1 3,385,963 - +0.2 3,385,963 - -0.1 3,385,986 - +0.0 3,386,071 - pulO OKFHMN_17350 0.25 +0.4 3,386,071 - pulO OKFHMN_17350 0.25 +0.4 3,386,071 - pulO OKFHMN_17350 0.25 -2.0 3,386,171 - pulO OKFHMN_17350 0.47 -0.3 3,386,171 - pulO OKFHMN_17350 0.47 +0.3 3,386,175 + pulO OKFHMN_17350 0.47 -1.2 3,386,175 + pulO OKFHMN_17350 0.47 +0.8 3,386,176 - pulO OKFHMN_17350 0.48 -0.6 3,386,176 - pulO OKFHMN_17350 0.48 +1.3 3,386,241 - pulO OKFHMN_17350 0.62 +0.0 3,386,253 + pulO OKFHMN_17350 0.64 +0.5 3,386,324 + pulO OKFHMN_17350 0.79 -2.2 3,386,324 + pulO OKFHMN_17350 0.79 +0.2 3,386,325 - pulO OKFHMN_17350 0.79 -0.0 3,386,337 + pulO OKFHMN_17350 0.82 +0.1 3,386,412 - -0.3 3,386,412 - -0.9 3,386,412 - +1.0 3,386,434 + -0.2 3,386,435 - +0.1 3,386,457 - +0.0 3,386,686 + -1.7
Or see this region's nucleotide sequence