Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yiaV and yiaU overlap by 4 nucleotides yiaU and yiaT are separated by 123 nucleotides yiaT and hybA1 are separated by 129 nucleotides
OKFHMN_15875: yiaV - Inner membrane protein YiaV, at 3,079,641 to 3,080,777
yiaV
OKFHMN_15880: yiaU - Uncharacterized HTH-type transcriptional regulator YiaU, at 3,080,774 to 3,081,748
yiaU
OKFHMN_15885: yiaT - Putative outer membrane protein YiaT, at 3,081,872 to 3,082,612
yiaT
OKFHMN_15890: hybA1 - Non-reducing end beta-L-arabinofuranosidase, at 3,082,742 to 3,084,712
hybA1
Position (kb)
3080
3081
3082 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3079.797 kb on + strand, within yiaV at 3079.805 kb on + strand, within yiaV at 3079.985 kb on + strand, within yiaV at 3079.986 kb on - strand, within yiaV at 3079.986 kb on - strand, within yiaV at 3080.011 kb on + strand, within yiaV at 3080.012 kb on - strand, within yiaV at 3080.074 kb on - strand, within yiaV at 3080.082 kb on + strand, within yiaV at 3080.283 kb on + strand, within yiaV at 3080.283 kb on + strand, within yiaV at 3080.284 kb on - strand, within yiaV at 3080.303 kb on - strand, within yiaV at 3080.325 kb on + strand, within yiaV at 3080.325 kb on + strand, within yiaV at 3080.326 kb on - strand, within yiaV at 3080.359 kb on - strand, within yiaV at 3080.396 kb on + strand, within yiaV at 3080.483 kb on - strand, within yiaV at 3080.487 kb on - strand, within yiaV at 3080.557 kb on - strand, within yiaV at 3080.575 kb on + strand, within yiaV at 3080.575 kb on + strand, within yiaV at 3080.575 kb on + strand, within yiaV at 3080.575 kb on + strand, within yiaV at 3080.656 kb on + strand, within yiaV at 3080.667 kb on - strand at 3080.689 kb on - strand at 3080.732 kb on - strand at 3080.732 kb on - strand at 3080.734 kb on + strand at 3080.735 kb on - strand at 3080.865 kb on + strand at 3080.865 kb on + strand at 3080.866 kb on - strand at 3080.886 kb on + strand, within yiaU at 3080.932 kb on - strand, within yiaU at 3080.932 kb on - strand, within yiaU at 3081.061 kb on - strand, within yiaU at 3081.094 kb on + strand, within yiaU at 3081.289 kb on - strand, within yiaU at 3081.432 kb on - strand, within yiaU at 3081.535 kb on - strand, within yiaU at 3081.730 kb on + strand at 3081.778 kb on - strand at 3081.966 kb on - strand, within yiaT at 3082.025 kb on + strand, within yiaT at 3082.154 kb on + strand, within yiaT at 3082.183 kb on + strand, within yiaT at 3082.187 kb on - strand, within yiaT at 3082.299 kb on + strand, within yiaT at 3082.317 kb on + strand, within yiaT at 3082.317 kb on + strand, within yiaT at 3082.318 kb on - strand, within yiaT at 3082.355 kb on + strand, within yiaT at 3082.382 kb on + strand, within yiaT at 3082.383 kb on - strand, within yiaT at 3082.414 kb on + strand, within yiaT at 3082.431 kb on - strand, within yiaT at 3082.457 kb on + strand, within yiaT at 3082.457 kb on + strand, within yiaT at 3082.458 kb on - strand, within yiaT at 3082.520 kb on + strand, within yiaT at 3082.642 kb on + strand at 3082.662 kb on + strand at 3082.663 kb on - strand at 3082.663 kb on - strand at 3082.671 kb on + strand at 3082.681 kb on + strand at 3082.682 kb on - strand at 3082.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,079,797 + yiaV OKFHMN_15875 0.14 +0.6 3,079,805 + yiaV OKFHMN_15875 0.14 -1.0 3,079,985 + yiaV OKFHMN_15875 0.30 +0.2 3,079,986 - yiaV OKFHMN_15875 0.30 -2.9 3,079,986 - yiaV OKFHMN_15875 0.30 +0.3 3,080,011 + yiaV OKFHMN_15875 0.33 -0.1 3,080,012 - yiaV OKFHMN_15875 0.33 -2.5 3,080,074 - yiaV OKFHMN_15875 0.38 +1.0 3,080,082 + yiaV OKFHMN_15875 0.39 +0.7 3,080,283 + yiaV OKFHMN_15875 0.56 -0.1 3,080,283 + yiaV OKFHMN_15875 0.56 -0.7 3,080,284 - yiaV OKFHMN_15875 0.57 +0.7 3,080,303 - yiaV OKFHMN_15875 0.58 +0.2 3,080,325 + yiaV OKFHMN_15875 0.60 +0.1 3,080,325 + yiaV OKFHMN_15875 0.60 +0.4 3,080,326 - yiaV OKFHMN_15875 0.60 +0.3 3,080,359 - yiaV OKFHMN_15875 0.63 +0.8 3,080,396 + yiaV OKFHMN_15875 0.66 -0.2 3,080,483 - yiaV OKFHMN_15875 0.74 -0.0 3,080,487 - yiaV OKFHMN_15875 0.74 +0.7 3,080,557 - yiaV OKFHMN_15875 0.81 +1.2 3,080,575 + yiaV OKFHMN_15875 0.82 +0.3 3,080,575 + yiaV OKFHMN_15875 0.82 +0.5 3,080,575 + yiaV OKFHMN_15875 0.82 -0.2 3,080,575 + yiaV OKFHMN_15875 0.82 +0.1 3,080,656 + yiaV OKFHMN_15875 0.89 +1.3 3,080,667 - -0.1 3,080,689 - -0.2 3,080,732 - +0.3 3,080,732 - +0.2 3,080,734 + +0.2 3,080,735 - +0.8 3,080,865 + +0.2 3,080,865 + +0.2 3,080,866 - +0.2 3,080,886 + yiaU OKFHMN_15880 0.11 -1.9 3,080,932 - yiaU OKFHMN_15880 0.16 -0.2 3,080,932 - yiaU OKFHMN_15880 0.16 +0.5 3,081,061 - yiaU OKFHMN_15880 0.29 +0.2 3,081,094 + yiaU OKFHMN_15880 0.33 -0.1 3,081,289 - yiaU OKFHMN_15880 0.53 +1.4 3,081,432 - yiaU OKFHMN_15880 0.67 +0.1 3,081,535 - yiaU OKFHMN_15880 0.78 -0.7 3,081,730 + -0.4 3,081,778 - -1.5 3,081,966 - yiaT OKFHMN_15885 0.13 -0.1 3,082,025 + yiaT OKFHMN_15885 0.21 -0.0 3,082,154 + yiaT OKFHMN_15885 0.38 +0.4 3,082,183 + yiaT OKFHMN_15885 0.42 -0.2 3,082,187 - yiaT OKFHMN_15885 0.43 +0.2 3,082,299 + yiaT OKFHMN_15885 0.58 -0.3 3,082,317 + yiaT OKFHMN_15885 0.60 -0.0 3,082,317 + yiaT OKFHMN_15885 0.60 +0.5 3,082,318 - yiaT OKFHMN_15885 0.60 -0.1 3,082,355 + yiaT OKFHMN_15885 0.65 -0.3 3,082,382 + yiaT OKFHMN_15885 0.69 +0.0 3,082,383 - yiaT OKFHMN_15885 0.69 -0.6 3,082,414 + yiaT OKFHMN_15885 0.73 +0.0 3,082,431 - yiaT OKFHMN_15885 0.75 +1.5 3,082,457 + yiaT OKFHMN_15885 0.79 -0.3 3,082,457 + yiaT OKFHMN_15885 0.79 -0.4 3,082,458 - yiaT OKFHMN_15885 0.79 +0.5 3,082,520 + yiaT OKFHMN_15885 0.87 -0.0 3,082,642 + -0.3 3,082,662 + -0.3 3,082,663 - +0.4 3,082,663 - +0.1 3,082,671 + -0.8 3,082,681 + -0.2 3,082,682 - -0.1 3,082,709 + +0.2
Or see this region's nucleotide sequence