Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15265

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntler and escE are separated by 14 nucleotidesescE and cesAB are separated by 12 nucleotidescesAB and escK overlap by 4 nucleotides OKFHMN_15265: ler - transcription regulator Ler, at 2,954,922 to 2,955,293 ler OKFHMN_15270: escE - chaperone for EscF, at 2,955,308 to 2,955,526 escE OKFHMN_15275: cesAB - chaperone for EspA and EspB, at 2,955,539 to 2,955,853 cesAB OKFHMN_15280: escK - type III secretion system sorting platform component, at 2,955,850 to 2,956,449 escK Position (kb) 2954 2955 2956Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2954.269 kb on - strandat 2954.269 kb on - strandat 2954.276 kb on - strandat 2954.287 kb on + strandat 2954.352 kb on - strandat 2954.382 kb on + strandat 2954.412 kb on - strandat 2954.414 kb on - strandat 2954.416 kb on - strandat 2954.416 kb on - strandat 2954.418 kb on - strandat 2954.426 kb on + strandat 2954.475 kb on - strandat 2954.475 kb on - strandat 2954.479 kb on - strandat 2954.483 kb on - strandat 2954.483 kb on - strandat 2954.483 kb on - strandat 2954.529 kb on + strandat 2954.597 kb on + strandat 2954.619 kb on - strandat 2954.898 kb on + strandat 2954.972 kb on - strand, within lerat 2955.060 kb on - strand, within lerat 2955.095 kb on + strand, within lerat 2955.148 kb on - strand, within lerat 2955.757 kb on + strand, within cesABat 2955.838 kb on + strandat 2955.971 kb on + strand, within escK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
2,954,269 - +0.2
2,954,269 - +0.5
2,954,276 - -1.6
2,954,287 + -0.4
2,954,352 - -1.1
2,954,382 + +1.7
2,954,412 - -0.8
2,954,414 - -1.1
2,954,416 - +0.5
2,954,416 - -1.0
2,954,418 - -0.2
2,954,426 + -1.2
2,954,475 - +0.5
2,954,475 - -2.0
2,954,479 - -1.6
2,954,483 - -0.6
2,954,483 - +4.2
2,954,483 - -1.6
2,954,529 + -1.4
2,954,597 + +0.5
2,954,619 - -1.5
2,954,898 + +0.1
2,954,972 - ler OKFHMN_15265 0.13 +0.4
2,955,060 - ler OKFHMN_15265 0.37 -0.7
2,955,095 + ler OKFHMN_15265 0.47 -0.0
2,955,148 - ler OKFHMN_15265 0.61 +0.3
2,955,757 + cesAB OKFHMN_15275 0.69 -1.7
2,955,838 + -0.1
2,955,971 + escK OKFHMN_15280 0.20 -0.4

Or see this region's nucleotide sequence