Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15260

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrorf1 and espG are separated by 127 nucleotides OKFHMN_15255: rorf1 - SdiA-regulated domain-containing protein, at 2,951,517 to 2,952,335 rorf1 OKFHMN_15260: espG - Type III secretion system effector EspG, GTPase activating protein, at 2,952,463 to 2,953,608 espG Position (kb) 2952 2953 2954Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2951.567 kb on - strandat 2951.589 kb on + strandat 2952.039 kb on + strand, within rorf1at 2952.040 kb on - strand, within rorf1at 2952.040 kb on - strand, within rorf1at 2952.040 kb on - strand, within rorf1at 2952.068 kb on + strand, within rorf1at 2952.186 kb on + strand, within rorf1at 2952.535 kb on - strandat 2952.561 kb on - strandat 2952.644 kb on + strand, within espGat 2952.645 kb on - strand, within espGat 2952.673 kb on - strand, within espGat 2952.673 kb on - strand, within espGat 2952.703 kb on + strand, within espGat 2952.704 kb on - strand, within espGat 2952.722 kb on + strand, within espGat 2952.722 kb on + strand, within espGat 2952.723 kb on - strand, within espGat 2952.786 kb on - strand, within espGat 2952.799 kb on + strand, within espGat 2952.881 kb on - strand, within espGat 2952.881 kb on - strand, within espGat 2952.916 kb on + strand, within espGat 2952.916 kb on + strand, within espGat 2952.916 kb on + strand, within espGat 2952.916 kb on + strand, within espGat 2952.917 kb on - strand, within espGat 2952.917 kb on - strand, within espGat 2952.917 kb on - strand, within espGat 2952.918 kb on + strand, within espGat 2952.918 kb on + strand, within espGat 2952.958 kb on + strand, within espGat 2952.995 kb on - strand, within espGat 2952.996 kb on + strand, within espGat 2952.996 kb on + strand, within espGat 2952.997 kb on - strand, within espGat 2953.044 kb on + strand, within espGat 2953.045 kb on - strand, within espGat 2953.045 kb on - strand, within espGat 2953.056 kb on + strand, within espGat 2953.071 kb on + strand, within espGat 2953.102 kb on - strand, within espGat 2953.123 kb on + strand, within espGat 2953.124 kb on - strand, within espGat 2953.135 kb on - strand, within espGat 2953.165 kb on - strand, within espGat 2953.209 kb on - strand, within espGat 2953.406 kb on - strand, within espGat 2953.460 kb on + strand, within espGat 2953.568 kb on - strandat 2953.632 kb on + strandat 2953.908 kb on + strandat 2954.269 kb on - strandat 2954.269 kb on - strandat 2954.276 kb on - strandat 2954.287 kb on + strandat 2954.352 kb on - strandat 2954.382 kb on + strandat 2954.412 kb on - strandat 2954.414 kb on - strandat 2954.416 kb on - strandat 2954.416 kb on - strandat 2954.418 kb on - strandat 2954.426 kb on + strandat 2954.475 kb on - strandat 2954.475 kb on - strandat 2954.479 kb on - strandat 2954.483 kb on - strandat 2954.483 kb on - strandat 2954.483 kb on - strandat 2954.529 kb on + strandat 2954.597 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,951,567 - -0.6
2,951,589 + -0.4
2,952,039 + rorf1 OKFHMN_15255 0.64 +0.2
2,952,040 - rorf1 OKFHMN_15255 0.64 +0.2
2,952,040 - rorf1 OKFHMN_15255 0.64 +0.9
2,952,040 - rorf1 OKFHMN_15255 0.64 +0.0
2,952,068 + rorf1 OKFHMN_15255 0.67 +0.5
2,952,186 + rorf1 OKFHMN_15255 0.82 +0.2
2,952,535 - +0.3
2,952,561 - +0.7
2,952,644 + espG OKFHMN_15260 0.16 +0.4
2,952,645 - espG OKFHMN_15260 0.16 +0.1
2,952,673 - espG OKFHMN_15260 0.18 -0.1
2,952,673 - espG OKFHMN_15260 0.18 +0.4
2,952,703 + espG OKFHMN_15260 0.21 -3.6
2,952,704 - espG OKFHMN_15260 0.21 -0.4
2,952,722 + espG OKFHMN_15260 0.23 +0.1
2,952,722 + espG OKFHMN_15260 0.23 -0.6
2,952,723 - espG OKFHMN_15260 0.23 -0.1
2,952,786 - espG OKFHMN_15260 0.28 -0.0
2,952,799 + espG OKFHMN_15260 0.29 +0.5
2,952,881 - espG OKFHMN_15260 0.36 +0.4
2,952,881 - espG OKFHMN_15260 0.36 +0.5
2,952,916 + espG OKFHMN_15260 0.40 -0.4
2,952,916 + espG OKFHMN_15260 0.40 -0.2
2,952,916 + espG OKFHMN_15260 0.40 -0.1
2,952,916 + espG OKFHMN_15260 0.40 -0.6
2,952,917 - espG OKFHMN_15260 0.40 +0.4
2,952,917 - espG OKFHMN_15260 0.40 -0.2
2,952,917 - espG OKFHMN_15260 0.40 -0.8
2,952,918 + espG OKFHMN_15260 0.40 +0.1
2,952,918 + espG OKFHMN_15260 0.40 +1.2
2,952,958 + espG OKFHMN_15260 0.43 +0.2
2,952,995 - espG OKFHMN_15260 0.46 +0.4
2,952,996 + espG OKFHMN_15260 0.47 +0.1
2,952,996 + espG OKFHMN_15260 0.47 +0.9
2,952,997 - espG OKFHMN_15260 0.47 +0.3
2,953,044 + espG OKFHMN_15260 0.51 -1.0
2,953,045 - espG OKFHMN_15260 0.51 +0.2
2,953,045 - espG OKFHMN_15260 0.51 +0.2
2,953,056 + espG OKFHMN_15260 0.52 +0.3
2,953,071 + espG OKFHMN_15260 0.53 -1.4
2,953,102 - espG OKFHMN_15260 0.56 +0.2
2,953,123 + espG OKFHMN_15260 0.58 +0.6
2,953,124 - espG OKFHMN_15260 0.58 -1.0
2,953,135 - espG OKFHMN_15260 0.59 -1.2
2,953,165 - espG OKFHMN_15260 0.61 -1.2
2,953,209 - espG OKFHMN_15260 0.65 +2.3
2,953,406 - espG OKFHMN_15260 0.82 -0.3
2,953,460 + espG OKFHMN_15260 0.87 -0.3
2,953,568 - -0.8
2,953,632 + -1.8
2,953,908 + -0.2
2,954,269 - +0.2
2,954,269 - +0.5
2,954,276 - -1.6
2,954,287 + -0.4
2,954,352 - -1.1
2,954,382 + +1.7
2,954,412 - -0.8
2,954,414 - -1.1
2,954,416 - +0.5
2,954,416 - -1.0
2,954,418 - -0.2
2,954,426 + -1.2
2,954,475 - +0.5
2,954,475 - -2.0
2,954,479 - -1.6
2,954,483 - -0.6
2,954,483 - +4.2
2,954,483 - -1.6
2,954,529 + -1.4
2,954,597 + +0.5

Or see this region's nucleotide sequence