Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_15250 and rorf1 are separated by 393 nucleotides rorf1 and espG are separated by 127 nucleotides
OKFHMN_15250: OKFHMN_15250 - Acyltransferase with acyl-CoA N-acyltransferase domain, at 2,951,016 to 2,951,123
_15250
OKFHMN_15255: rorf1 - SdiA-regulated domain-containing protein, at 2,951,517 to 2,952,335
rorf1
OKFHMN_15260: espG - Type III secretion system effector EspG, GTPase activating protein, at 2,952,463 to 2,953,608
espG
Position (kb)
2951
2952
2953 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2950.530 kb on + strand at 2950.531 kb on - strand at 2950.531 kb on - strand at 2950.759 kb on - strand at 2950.759 kb on - strand at 2950.986 kb on + strand at 2951.016 kb on - strand at 2951.567 kb on - strand at 2951.589 kb on + strand at 2952.039 kb on + strand, within rorf1 at 2952.040 kb on - strand, within rorf1 at 2952.040 kb on - strand, within rorf1 at 2952.040 kb on - strand, within rorf1 at 2952.068 kb on + strand, within rorf1 at 2952.186 kb on + strand, within rorf1 at 2952.535 kb on - strand at 2952.561 kb on - strand at 2952.644 kb on + strand, within espG at 2952.645 kb on - strand, within espG at 2952.673 kb on - strand, within espG at 2952.673 kb on - strand, within espG at 2952.703 kb on + strand, within espG at 2952.704 kb on - strand, within espG at 2952.722 kb on + strand, within espG at 2952.722 kb on + strand, within espG at 2952.723 kb on - strand, within espG at 2952.786 kb on - strand, within espG at 2952.799 kb on + strand, within espG at 2952.881 kb on - strand, within espG at 2952.881 kb on - strand, within espG at 2952.916 kb on + strand, within espG at 2952.916 kb on + strand, within espG at 2952.916 kb on + strand, within espG at 2952.916 kb on + strand, within espG at 2952.917 kb on - strand, within espG at 2952.917 kb on - strand, within espG at 2952.917 kb on - strand, within espG at 2952.918 kb on + strand, within espG at 2952.918 kb on + strand, within espG at 2952.958 kb on + strand, within espG at 2952.995 kb on - strand, within espG at 2952.996 kb on + strand, within espG at 2952.996 kb on + strand, within espG at 2952.997 kb on - strand, within espG at 2953.044 kb on + strand, within espG at 2953.045 kb on - strand, within espG at 2953.045 kb on - strand, within espG at 2953.056 kb on + strand, within espG at 2953.071 kb on + strand, within espG at 2953.102 kb on - strand, within espG at 2953.123 kb on + strand, within espG at 2953.124 kb on - strand, within espG at 2953.135 kb on - strand, within espG at 2953.165 kb on - strand, within espG at 2953.209 kb on - strand, within espG
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,950,530 + +0.2 2,950,531 - +0.3 2,950,531 - -1.2 2,950,759 - +0.0 2,950,759 - -0.0 2,950,986 + +0.6 2,951,016 - -0.7 2,951,567 - -0.6 2,951,589 + -0.4 2,952,039 + rorf1 OKFHMN_15255 0.64 +0.2 2,952,040 - rorf1 OKFHMN_15255 0.64 +0.2 2,952,040 - rorf1 OKFHMN_15255 0.64 +0.9 2,952,040 - rorf1 OKFHMN_15255 0.64 +0.0 2,952,068 + rorf1 OKFHMN_15255 0.67 +0.5 2,952,186 + rorf1 OKFHMN_15255 0.82 +0.2 2,952,535 - +0.3 2,952,561 - +0.7 2,952,644 + espG OKFHMN_15260 0.16 +0.4 2,952,645 - espG OKFHMN_15260 0.16 +0.1 2,952,673 - espG OKFHMN_15260 0.18 -0.1 2,952,673 - espG OKFHMN_15260 0.18 +0.4 2,952,703 + espG OKFHMN_15260 0.21 -3.6 2,952,704 - espG OKFHMN_15260 0.21 -0.4 2,952,722 + espG OKFHMN_15260 0.23 +0.1 2,952,722 + espG OKFHMN_15260 0.23 -0.6 2,952,723 - espG OKFHMN_15260 0.23 -0.1 2,952,786 - espG OKFHMN_15260 0.28 -0.0 2,952,799 + espG OKFHMN_15260 0.29 +0.5 2,952,881 - espG OKFHMN_15260 0.36 +0.4 2,952,881 - espG OKFHMN_15260 0.36 +0.5 2,952,916 + espG OKFHMN_15260 0.40 -0.4 2,952,916 + espG OKFHMN_15260 0.40 -0.2 2,952,916 + espG OKFHMN_15260 0.40 -0.1 2,952,916 + espG OKFHMN_15260 0.40 -0.6 2,952,917 - espG OKFHMN_15260 0.40 +0.4 2,952,917 - espG OKFHMN_15260 0.40 -0.2 2,952,917 - espG OKFHMN_15260 0.40 -0.8 2,952,918 + espG OKFHMN_15260 0.40 +0.1 2,952,918 + espG OKFHMN_15260 0.40 +1.2 2,952,958 + espG OKFHMN_15260 0.43 +0.2 2,952,995 - espG OKFHMN_15260 0.46 +0.4 2,952,996 + espG OKFHMN_15260 0.47 +0.1 2,952,996 + espG OKFHMN_15260 0.47 +0.9 2,952,997 - espG OKFHMN_15260 0.47 +0.3 2,953,044 + espG OKFHMN_15260 0.51 -1.0 2,953,045 - espG OKFHMN_15260 0.51 +0.2 2,953,045 - espG OKFHMN_15260 0.51 +0.2 2,953,056 + espG OKFHMN_15260 0.52 +0.3 2,953,071 + espG OKFHMN_15260 0.53 -1.4 2,953,102 - espG OKFHMN_15260 0.56 +0.2 2,953,123 + espG OKFHMN_15260 0.58 +0.6 2,953,124 - espG OKFHMN_15260 0.58 -1.0 2,953,135 - espG OKFHMN_15260 0.59 -1.2 2,953,165 - espG OKFHMN_15260 0.61 -1.2 2,953,209 - espG OKFHMN_15260 0.65 +2.3
Or see this region's nucleotide sequence