Strain Fitness in Escherichia coli ECRC100 around OKFHMN_15250

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyicL and OKFHMN_15250 are separated by 518 nucleotidesOKFHMN_15250 and rorf1 are separated by 393 nucleotides OKFHMN_15245: yicL - carboxylate/amino acid/amine transporter, at 2,949,574 to 2,950,497 yicL OKFHMN_15250: OKFHMN_15250 - Acyltransferase with acyl-CoA N-acyltransferase domain, at 2,951,016 to 2,951,123 _15250 OKFHMN_15255: rorf1 - SdiA-regulated domain-containing protein, at 2,951,517 to 2,952,335 rorf1 Position (kb) 2951 2952Strain fitness (log2 ratio) -1 0 1at 2950.042 kb on + strand, within yicLat 2950.164 kb on + strand, within yicLat 2950.222 kb on + strand, within yicLat 2950.240 kb on + strand, within yicLat 2950.337 kb on - strand, within yicLat 2950.378 kb on - strand, within yicLat 2950.378 kb on - strand, within yicLat 2950.419 kb on - strandat 2950.512 kb on - strandat 2950.530 kb on + strandat 2950.531 kb on - strandat 2950.531 kb on - strandat 2950.759 kb on - strandat 2950.759 kb on - strandat 2950.986 kb on + strandat 2951.016 kb on - strandat 2951.567 kb on - strandat 2951.589 kb on + strandat 2952.039 kb on + strand, within rorf1at 2952.040 kb on - strand, within rorf1at 2952.040 kb on - strand, within rorf1at 2952.040 kb on - strand, within rorf1at 2952.068 kb on + strand, within rorf1

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,950,042 + yicL OKFHMN_15245 0.51 +0.4
2,950,164 + yicL OKFHMN_15245 0.64 -0.4
2,950,222 + yicL OKFHMN_15245 0.70 -0.4
2,950,240 + yicL OKFHMN_15245 0.72 +0.7
2,950,337 - yicL OKFHMN_15245 0.83 -0.1
2,950,378 - yicL OKFHMN_15245 0.87 -0.3
2,950,378 - yicL OKFHMN_15245 0.87 +0.0
2,950,419 - +0.4
2,950,512 - +0.1
2,950,530 + +0.2
2,950,531 - +0.3
2,950,531 - -1.2
2,950,759 - +0.0
2,950,759 - -0.0
2,950,986 + +0.6
2,951,016 - -0.7
2,951,567 - -0.6
2,951,589 + -0.4
2,952,039 + rorf1 OKFHMN_15255 0.64 +0.2
2,952,040 - rorf1 OKFHMN_15255 0.64 +0.2
2,952,040 - rorf1 OKFHMN_15255 0.64 +0.9
2,952,040 - rorf1 OKFHMN_15255 0.64 +0.0
2,952,068 + rorf1 OKFHMN_15255 0.67 +0.5

Or see this region's nucleotide sequence