Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13980

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdhE and OKFHMN_13975 are separated by 329 nucleotidesOKFHMN_13975 and yiiE are separated by 216 nucleotidesyiiE and OKFHMN_13985 are separated by 693 nucleotides OKFHMN_13970: fdhE - formate dehydrogenase accessory protein FdhE, at 2,695,178 to 2,696,107 fdhE OKFHMN_13975: OKFHMN_13975 - RHH-3 domain-containing protein, at 2,696,437 to 2,696,679 _13975 OKFHMN_13980: yiiE - Uncharacterized protein YiiE, at 2,696,896 to 2,697,114 yiiE OKFHMN_13985: OKFHMN_13985 - Transposase, at 2,697,808 to 2,698,722 _13985 Position (kb) 2696 2697 2698Strain fitness (log2 ratio) -3 -2 -1 0 1at 2695.896 kb on - strand, within fdhEat 2695.959 kb on - strand, within fdhEat 2696.155 kb on - strandat 2696.276 kb on + strandat 2696.282 kb on + strandat 2696.310 kb on - strandat 2696.321 kb on + strandat 2696.342 kb on + strandat 2696.439 kb on - strandat 2696.543 kb on + strand, within OKFHMN_13975at 2696.544 kb on - strand, within OKFHMN_13975at 2696.617 kb on - strand, within OKFHMN_13975at 2696.662 kb on - strandat 2696.722 kb on + strandat 2696.754 kb on + strandat 2696.844 kb on - strandat 2696.913 kb on + strandat 2697.320 kb on + strandat 2697.397 kb on + strandat 2697.397 kb on + strandat 2697.424 kb on + strandat 2697.497 kb on + strandat 2697.602 kb on - strandat 2697.659 kb on - strandat 2697.973 kb on + strand, within OKFHMN_13985at 2697.973 kb on + strand, within OKFHMN_13985

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,695,896 - fdhE OKFHMN_13970 0.77 +0.2
2,695,959 - fdhE OKFHMN_13970 0.84 -0.4
2,696,155 - +0.5
2,696,276 + -0.2
2,696,282 + -0.0
2,696,310 - +0.2
2,696,321 + +0.2
2,696,342 + -0.5
2,696,439 - -0.8
2,696,543 + OKFHMN_13975 0.44 -0.9
2,696,544 - OKFHMN_13975 0.44 +0.3
2,696,617 - OKFHMN_13975 0.74 -1.1
2,696,662 - +0.6
2,696,722 + -0.4
2,696,754 + +0.2
2,696,844 - +0.3
2,696,913 + +0.1
2,697,320 + +0.1
2,697,397 + +0.2
2,697,397 + +0.2
2,697,424 + +0.9
2,697,497 + -0.2
2,697,602 - +0.5
2,697,659 - -3.2
2,697,973 + OKFHMN_13985 0.18 -0.3
2,697,973 + OKFHMN_13985 0.18 -0.0

Or see this region's nucleotide sequence