Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13530

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurI and btuB overlap by 56 nucleotidesbtuB and trmA are separated by 368 nucleotides OKFHMN_13525: murI - glutamate racemase, at 2,599,492 to 2,600,349 murI OKFHMN_13530: btuB - TonB-dependent vitamin B12 receptor BtuB, at 2,600,294 to 2,602,138 btuB OKFHMN_13535: trmA - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 2,602,507 to 2,603,607 trmA Position (kb) 2600 2601 2602 2603Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2600.385 kb on - strandat 2600.462 kb on - strandat 2600.478 kb on + strandat 2600.479 kb on - strand, within btuBat 2600.488 kb on - strand, within btuBat 2600.499 kb on + strand, within btuBat 2600.500 kb on - strand, within btuBat 2600.510 kb on + strand, within btuBat 2600.514 kb on + strand, within btuBat 2600.514 kb on + strand, within btuBat 2600.515 kb on - strand, within btuBat 2600.515 kb on - strand, within btuBat 2600.515 kb on - strand, within btuBat 2600.520 kb on + strand, within btuBat 2600.520 kb on + strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.521 kb on - strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.524 kb on + strand, within btuBat 2600.525 kb on - strand, within btuBat 2600.525 kb on - strand, within btuBat 2600.525 kb on - strand, within btuBat 2600.525 kb on - strand, within btuBat 2600.545 kb on - strand, within btuBat 2600.566 kb on - strand, within btuBat 2600.592 kb on - strand, within btuBat 2600.632 kb on - strand, within btuBat 2600.637 kb on + strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.638 kb on - strand, within btuBat 2600.647 kb on + strand, within btuBat 2600.648 kb on - strand, within btuBat 2600.696 kb on - strand, within btuBat 2600.718 kb on + strand, within btuBat 2600.719 kb on - strand, within btuBat 2600.719 kb on - strand, within btuBat 2600.767 kb on + strand, within btuBat 2600.783 kb on - strand, within btuBat 2600.783 kb on - strand, within btuBat 2600.874 kb on + strand, within btuBat 2600.899 kb on + strand, within btuBat 2600.899 kb on + strand, within btuBat 2600.899 kb on + strand, within btuBat 2600.900 kb on - strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.901 kb on + strand, within btuBat 2600.902 kb on - strand, within btuBat 2600.902 kb on - strand, within btuBat 2600.902 kb on - strand, within btuBat 2601.026 kb on - strand, within btuBat 2601.026 kb on - strand, within btuBat 2601.058 kb on - strand, within btuBat 2601.067 kb on + strand, within btuBat 2601.070 kb on + strand, within btuBat 2601.071 kb on - strand, within btuBat 2601.081 kb on + strand, within btuBat 2601.082 kb on - strand, within btuBat 2601.082 kb on - strand, within btuBat 2601.083 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.096 kb on + strand, within btuBat 2601.097 kb on - strand, within btuBat 2601.097 kb on - strand, within btuBat 2601.097 kb on - strand, within btuBat 2601.152 kb on - strand, within btuBat 2601.152 kb on - strand, within btuBat 2601.192 kb on + strand, within btuBat 2601.192 kb on + strand, within btuBat 2601.193 kb on - strand, within btuBat 2601.193 kb on - strand, within btuBat 2601.193 kb on - strand, within btuBat 2601.229 kb on - strand, within btuBat 2601.249 kb on + strand, within btuBat 2601.250 kb on - strand, within btuBat 2601.250 kb on - strand, within btuBat 2601.256 kb on - strand, within btuBat 2601.256 kb on - strand, within btuBat 2601.266 kb on - strand, within btuBat 2601.271 kb on + strand, within btuBat 2601.271 kb on + strand, within btuBat 2601.272 kb on - strand, within btuBat 2601.273 kb on + strand, within btuBat 2601.273 kb on + strand, within btuBat 2601.273 kb on + strand, within btuBat 2601.310 kb on + strand, within btuBat 2601.310 kb on + strand, within btuBat 2601.312 kb on + strand, within btuBat 2601.340 kb on + strand, within btuBat 2601.381 kb on + strand, within btuBat 2601.384 kb on + strand, within btuBat 2601.385 kb on - strand, within btuBat 2601.393 kb on + strand, within btuBat 2601.411 kb on + strand, within btuBat 2601.482 kb on - strand, within btuBat 2601.499 kb on + strand, within btuBat 2601.531 kb on + strand, within btuBat 2601.532 kb on - strand, within btuBat 2601.546 kb on + strand, within btuBat 2601.546 kb on + strand, within btuBat 2601.547 kb on - strand, within btuBat 2601.547 kb on - strand, within btuBat 2601.557 kb on - strand, within btuBat 2601.564 kb on + strand, within btuBat 2601.592 kb on + strand, within btuBat 2601.592 kb on + strand, within btuBat 2601.592 kb on + strand, within btuBat 2601.624 kb on + strand, within btuBat 2601.624 kb on + strand, within btuBat 2601.625 kb on - strand, within btuBat 2601.625 kb on - strand, within btuBat 2601.637 kb on + strand, within btuBat 2601.638 kb on - strand, within btuBat 2601.638 kb on - strand, within btuBat 2601.638 kb on - strand, within btuBat 2601.638 kb on - strand, within btuBat 2601.638 kb on - strand, within btuBat 2601.638 kb on - strand, within btuBat 2601.638 kb on - strand, within btuBat 2601.710 kb on + strand, within btuBat 2601.710 kb on + strand, within btuBat 2601.726 kb on + strand, within btuBat 2601.751 kb on + strand, within btuBat 2601.752 kb on - strand, within btuBat 2601.753 kb on + strand, within btuBat 2601.753 kb on + strand, within btuBat 2601.842 kb on + strand, within btuBat 2601.843 kb on - strand, within btuBat 2601.843 kb on - strand, within btuBat 2602.042 kb on + strandat 2602.072 kb on + strandat 2602.141 kb on + strandat 2602.184 kb on + strandat 2602.184 kb on + strandat 2602.185 kb on - strandat 2602.245 kb on + strandat 2602.246 kb on - strandat 2602.249 kb on + strandat 2602.249 kb on + strandat 2602.249 kb on + strandat 2602.249 kb on + strandat 2602.250 kb on - strandat 2602.250 kb on - strandat 2602.250 kb on - strandat 2602.250 kb on - strandat 2602.254 kb on + strandat 2602.254 kb on + strandat 2602.254 kb on + strandat 2602.257 kb on + strandat 2602.257 kb on + strandat 2602.257 kb on + strandat 2602.257 kb on + strandat 2602.258 kb on - strandat 2602.359 kb on + strandat 2602.359 kb on + strandat 2602.362 kb on + strandat 2602.363 kb on - strandat 2602.389 kb on + strandat 2602.389 kb on + strandat 2602.390 kb on - strandat 2602.398 kb on + strandat 2602.398 kb on + strandat 2602.406 kb on + strandat 2602.407 kb on - strandat 2602.420 kb on - strandat 2602.483 kb on + strandat 2602.484 kb on - strandat 2602.501 kb on + strandat 2602.501 kb on + strandat 2602.537 kb on + strandat 2602.537 kb on + strandat 2602.538 kb on - strandat 2602.538 kb on - strandat 2602.578 kb on + strandat 2602.578 kb on + strandat 2602.578 kb on + strandat 2602.578 kb on + strandat 2602.579 kb on - strandat 2602.579 kb on - strandat 2602.579 kb on - strandat 2602.579 kb on - strandat 2602.797 kb on + strand, within trmAat 2602.797 kb on + strand, within trmAat 2602.797 kb on + strand, within trmAat 2602.835 kb on - strand, within trmAat 2602.877 kb on - strand, within trmAat 2602.877 kb on - strand, within trmAat 2602.881 kb on + strand, within trmAat 2603.005 kb on + strand, within trmAat 2603.005 kb on + strand, within trmAat 2603.005 kb on + strand, within trmAat 2603.006 kb on - strand, within trmAat 2603.006 kb on - strand, within trmAat 2603.048 kb on - strand, within trmAat 2603.048 kb on - strand, within trmA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,600,385 - +0.5
2,600,462 - +0.8
2,600,478 + -0.1
2,600,479 - btuB OKFHMN_13530 0.10 -0.0
2,600,488 - btuB OKFHMN_13530 0.11 -1.0
2,600,499 + btuB OKFHMN_13530 0.11 +0.4
2,600,500 - btuB OKFHMN_13530 0.11 +0.2
2,600,510 + btuB OKFHMN_13530 0.12 -0.1
2,600,514 + btuB OKFHMN_13530 0.12 -0.1
2,600,514 + btuB OKFHMN_13530 0.12 -0.5
2,600,515 - btuB OKFHMN_13530 0.12 -0.7
2,600,515 - btuB OKFHMN_13530 0.12 -0.7
2,600,515 - btuB OKFHMN_13530 0.12 +1.4
2,600,520 + btuB OKFHMN_13530 0.12 -0.5
2,600,520 + btuB OKFHMN_13530 0.12 -0.8
2,600,521 - btuB OKFHMN_13530 0.12 -0.3
2,600,521 - btuB OKFHMN_13530 0.12 -0.5
2,600,521 - btuB OKFHMN_13530 0.12 +1.0
2,600,521 - btuB OKFHMN_13530 0.12 +0.1
2,600,521 - btuB OKFHMN_13530 0.12 +0.2
2,600,524 + btuB OKFHMN_13530 0.12 +0.1
2,600,524 + btuB OKFHMN_13530 0.12 -0.3
2,600,524 + btuB OKFHMN_13530 0.12 -0.4
2,600,524 + btuB OKFHMN_13530 0.12 +0.1
2,600,524 + btuB OKFHMN_13530 0.12 -0.6
2,600,525 - btuB OKFHMN_13530 0.13 +0.4
2,600,525 - btuB OKFHMN_13530 0.13 +0.0
2,600,525 - btuB OKFHMN_13530 0.13 -0.2
2,600,525 - btuB OKFHMN_13530 0.13 -1.5
2,600,545 - btuB OKFHMN_13530 0.14 -2.8
2,600,566 - btuB OKFHMN_13530 0.15 +0.3
2,600,592 - btuB OKFHMN_13530 0.16 +0.6
2,600,632 - btuB OKFHMN_13530 0.18 -0.3
2,600,637 + btuB OKFHMN_13530 0.19 -2.9
2,600,638 - btuB OKFHMN_13530 0.19 -0.4
2,600,638 - btuB OKFHMN_13530 0.19 +1.8
2,600,638 - btuB OKFHMN_13530 0.19 +0.1
2,600,638 - btuB OKFHMN_13530 0.19 -0.7
2,600,638 - btuB OKFHMN_13530 0.19 -1.3
2,600,647 + btuB OKFHMN_13530 0.19 -0.0
2,600,648 - btuB OKFHMN_13530 0.19 +0.1
2,600,696 - btuB OKFHMN_13530 0.22 -0.2
2,600,718 + btuB OKFHMN_13530 0.23 -0.1
2,600,719 - btuB OKFHMN_13530 0.23 +0.0
2,600,719 - btuB OKFHMN_13530 0.23 +0.1
2,600,767 + btuB OKFHMN_13530 0.26 -0.0
2,600,783 - btuB OKFHMN_13530 0.27 +0.7
2,600,783 - btuB OKFHMN_13530 0.27 +1.0
2,600,874 + btuB OKFHMN_13530 0.31 -0.7
2,600,899 + btuB OKFHMN_13530 0.33 +0.5
2,600,899 + btuB OKFHMN_13530 0.33 +0.2
2,600,899 + btuB OKFHMN_13530 0.33 -1.7
2,600,900 - btuB OKFHMN_13530 0.33 -1.6
2,600,901 + btuB OKFHMN_13530 0.33 +0.3
2,600,901 + btuB OKFHMN_13530 0.33 -0.8
2,600,901 + btuB OKFHMN_13530 0.33 -0.6
2,600,901 + btuB OKFHMN_13530 0.33 -2.6
2,600,901 + btuB OKFHMN_13530 0.33 -0.2
2,600,901 + btuB OKFHMN_13530 0.33 -0.1
2,600,901 + btuB OKFHMN_13530 0.33 -0.3
2,600,902 - btuB OKFHMN_13530 0.33 +0.1
2,600,902 - btuB OKFHMN_13530 0.33 +0.1
2,600,902 - btuB OKFHMN_13530 0.33 -0.0
2,601,026 - btuB OKFHMN_13530 0.40 -0.5
2,601,026 - btuB OKFHMN_13530 0.40 -0.4
2,601,058 - btuB OKFHMN_13530 0.41 +1.5
2,601,067 + btuB OKFHMN_13530 0.42 -0.3
2,601,070 + btuB OKFHMN_13530 0.42 -1.1
2,601,071 - btuB OKFHMN_13530 0.42 -2.4
2,601,081 + btuB OKFHMN_13530 0.43 -0.6
2,601,082 - btuB OKFHMN_13530 0.43 +0.5
2,601,082 - btuB OKFHMN_13530 0.43 -3.2
2,601,083 + btuB OKFHMN_13530 0.43 +0.6
2,601,096 + btuB OKFHMN_13530 0.43 -1.0
2,601,096 + btuB OKFHMN_13530 0.43 +0.1
2,601,096 + btuB OKFHMN_13530 0.43 +0.2
2,601,096 + btuB OKFHMN_13530 0.43 -0.3
2,601,096 + btuB OKFHMN_13530 0.43 -0.2
2,601,096 + btuB OKFHMN_13530 0.43 +0.6
2,601,096 + btuB OKFHMN_13530 0.43 -0.4
2,601,097 - btuB OKFHMN_13530 0.44 +0.2
2,601,097 - btuB OKFHMN_13530 0.44 -1.3
2,601,097 - btuB OKFHMN_13530 0.44 -0.1
2,601,152 - btuB OKFHMN_13530 0.47 -0.2
2,601,152 - btuB OKFHMN_13530 0.47 -0.3
2,601,192 + btuB OKFHMN_13530 0.49 +1.5
2,601,192 + btuB OKFHMN_13530 0.49 -0.2
2,601,193 - btuB OKFHMN_13530 0.49 +1.4
2,601,193 - btuB OKFHMN_13530 0.49 +2.4
2,601,193 - btuB OKFHMN_13530 0.49 -0.0
2,601,229 - btuB OKFHMN_13530 0.51 -1.2
2,601,249 + btuB OKFHMN_13530 0.52 +0.1
2,601,250 - btuB OKFHMN_13530 0.52 -0.0
2,601,250 - btuB OKFHMN_13530 0.52 -0.2
2,601,256 - btuB OKFHMN_13530 0.52 -0.5
2,601,256 - btuB OKFHMN_13530 0.52 -0.4
2,601,266 - btuB OKFHMN_13530 0.53 +0.0
2,601,271 + btuB OKFHMN_13530 0.53 -0.4
2,601,271 + btuB OKFHMN_13530 0.53 -0.5
2,601,272 - btuB OKFHMN_13530 0.53 -1.4
2,601,273 + btuB OKFHMN_13530 0.53 -0.0
2,601,273 + btuB OKFHMN_13530 0.53 +0.2
2,601,273 + btuB OKFHMN_13530 0.53 +0.5
2,601,310 + btuB OKFHMN_13530 0.55 +0.1
2,601,310 + btuB OKFHMN_13530 0.55 +0.4
2,601,312 + btuB OKFHMN_13530 0.55 -0.4
2,601,340 + btuB OKFHMN_13530 0.57 +0.9
2,601,381 + btuB OKFHMN_13530 0.59 +0.0
2,601,384 + btuB OKFHMN_13530 0.59 -0.6
2,601,385 - btuB OKFHMN_13530 0.59 +0.6
2,601,393 + btuB OKFHMN_13530 0.60 -0.2
2,601,411 + btuB OKFHMN_13530 0.61 +0.0
2,601,482 - btuB OKFHMN_13530 0.64 -0.1
2,601,499 + btuB OKFHMN_13530 0.65 -0.5
2,601,531 + btuB OKFHMN_13530 0.67 +0.4
2,601,532 - btuB OKFHMN_13530 0.67 -0.3
2,601,546 + btuB OKFHMN_13530 0.68 +0.3
2,601,546 + btuB OKFHMN_13530 0.68 +0.7
2,601,547 - btuB OKFHMN_13530 0.68 -0.0
2,601,547 - btuB OKFHMN_13530 0.68 +0.0
2,601,557 - btuB OKFHMN_13530 0.68 -0.1
2,601,564 + btuB OKFHMN_13530 0.69 -0.2
2,601,592 + btuB OKFHMN_13530 0.70 +0.1
2,601,592 + btuB OKFHMN_13530 0.70 +0.3
2,601,592 + btuB OKFHMN_13530 0.70 +0.8
2,601,624 + btuB OKFHMN_13530 0.72 -0.3
2,601,624 + btuB OKFHMN_13530 0.72 +0.9
2,601,625 - btuB OKFHMN_13530 0.72 +0.5
2,601,625 - btuB OKFHMN_13530 0.72 -2.8
2,601,637 + btuB OKFHMN_13530 0.73 -0.6
2,601,638 - btuB OKFHMN_13530 0.73 -1.2
2,601,638 - btuB OKFHMN_13530 0.73 +0.0
2,601,638 - btuB OKFHMN_13530 0.73 +1.3
2,601,638 - btuB OKFHMN_13530 0.73 -0.6
2,601,638 - btuB OKFHMN_13530 0.73 +0.4
2,601,638 - btuB OKFHMN_13530 0.73 -0.0
2,601,638 - btuB OKFHMN_13530 0.73 -1.6
2,601,710 + btuB OKFHMN_13530 0.77 -0.8
2,601,710 + btuB OKFHMN_13530 0.77 -0.3
2,601,726 + btuB OKFHMN_13530 0.78 -0.3
2,601,751 + btuB OKFHMN_13530 0.79 -0.1
2,601,752 - btuB OKFHMN_13530 0.79 -0.2
2,601,753 + btuB OKFHMN_13530 0.79 +1.2
2,601,753 + btuB OKFHMN_13530 0.79 -0.4
2,601,842 + btuB OKFHMN_13530 0.84 +0.5
2,601,843 - btuB OKFHMN_13530 0.84 -2.5
2,601,843 - btuB OKFHMN_13530 0.84 +0.4
2,602,042 + +0.3
2,602,072 + +0.2
2,602,141 + -0.2
2,602,184 + -0.5
2,602,184 + -0.4
2,602,185 - -0.4
2,602,245 + +0.4
2,602,246 - -0.4
2,602,249 + +0.5
2,602,249 + -0.2
2,602,249 + -0.2
2,602,249 + -0.7
2,602,250 - -0.5
2,602,250 - +0.3
2,602,250 - -1.2
2,602,250 - -0.3
2,602,254 + -0.1
2,602,254 + -0.1
2,602,254 + -2.4
2,602,257 + -0.0
2,602,257 + +0.6
2,602,257 + -0.0
2,602,257 + -1.4
2,602,258 - +0.0
2,602,359 + -1.0
2,602,359 + -0.0
2,602,362 + -0.4
2,602,363 - +0.1
2,602,389 + -0.4
2,602,389 + -1.2
2,602,390 - +0.5
2,602,398 + -0.7
2,602,398 + -0.9
2,602,406 + -0.0
2,602,407 - -0.0
2,602,420 - -0.9
2,602,483 + +0.4
2,602,484 - +0.6
2,602,501 + -0.1
2,602,501 + +2.5
2,602,537 + -0.2
2,602,537 + +0.1
2,602,538 - +0.2
2,602,538 - +0.1
2,602,578 + +0.4
2,602,578 + +0.2
2,602,578 + +1.1
2,602,578 + -0.0
2,602,579 - -2.4
2,602,579 - -0.4
2,602,579 - +0.6
2,602,579 - -0.1
2,602,797 + trmA OKFHMN_13535 0.26 -0.5
2,602,797 + trmA OKFHMN_13535 0.26 -0.0
2,602,797 + trmA OKFHMN_13535 0.26 -0.3
2,602,835 - trmA OKFHMN_13535 0.30 +0.1
2,602,877 - trmA OKFHMN_13535 0.34 -0.0
2,602,877 - trmA OKFHMN_13535 0.34 -0.1
2,602,881 + trmA OKFHMN_13535 0.34 -0.4
2,603,005 + trmA OKFHMN_13535 0.45 +0.2
2,603,005 + trmA OKFHMN_13535 0.45 +0.6
2,603,005 + trmA OKFHMN_13535 0.45 +0.2
2,603,006 - trmA OKFHMN_13535 0.45 -0.3
2,603,006 - trmA OKFHMN_13535 0.45 +0.2
2,603,048 - trmA OKFHMN_13535 0.49 +0.5
2,603,048 - trmA OKFHMN_13535 0.49 -0.6

Or see this region's nucleotide sequence