Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12995

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlomR and OKFHMN_12990 are separated by 67 nucleotidesOKFHMN_12990 and OKFHMN_12995 are separated by 238 nucleotidesOKFHMN_12995 and tnp-IS3 are separated by 271 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotides OKFHMN_12985: lomR - Ail/Lom family protein, at 2,492,228 to 2,492,827 lomR OKFHMN_12990: OKFHMN_12990 - host specificity protein J, at 2,492,895 to 2,493,395 _12990 OKFHMN_12995: OKFHMN_12995 - CPS-53 (KpLE1) prophage protein, at 2,493,634 to 2,494,020 _12995 OKFHMN_13000: tnp-IS3 - IS3 family transposase, at 2,494,292 to 2,494,618 tnp-IS3 OKFHMN_13005: tnp-IS3 - IS3 family transposase, at 2,494,618 to 2,495,505 tnp-IS3 Position (kb) 2493 2494 2495Strain fitness (log2 ratio) -1 0 1at 2493.130 kb on + strand, within OKFHMN_12990at 2493.577 kb on + strandat 2493.735 kb on + strand, within OKFHMN_12995at 2493.795 kb on + strand, within OKFHMN_12995at 2493.796 kb on - strand, within OKFHMN_12995at 2493.816 kb on + strand, within OKFHMN_12995at 2493.855 kb on + strand, within OKFHMN_12995at 2493.873 kb on + strand, within OKFHMN_12995at 2494.005 kb on + strandat 2494.027 kb on + strandat 2494.055 kb on - strandat 2494.077 kb on - strandat 2494.134 kb on - strandat 2494.134 kb on - strandat 2494.134 kb on - strandat 2494.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,493,130 + OKFHMN_12990 0.47 +0.3
2,493,577 + +0.6
2,493,735 + OKFHMN_12995 0.26 +0.1
2,493,795 + OKFHMN_12995 0.42 -0.5
2,493,796 - OKFHMN_12995 0.42 +0.5
2,493,816 + OKFHMN_12995 0.47 -0.1
2,493,855 + OKFHMN_12995 0.57 -0.4
2,493,873 + OKFHMN_12995 0.62 +0.2
2,494,005 + +0.0
2,494,027 + -0.1
2,494,055 - +1.0
2,494,077 - +0.2
2,494,134 - -0.4
2,494,134 - +0.0
2,494,134 - -0.2
2,494,134 - -0.2

Or see this region's nucleotide sequence