Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lomR and OKFHMN_12990 are separated by 67 nucleotides OKFHMN_12990 and OKFHMN_12995 are separated by 238 nucleotides OKFHMN_12995 and tnp-IS3 are separated by 271 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides
OKFHMN_12985: lomR - Ail/Lom family protein, at 2,492,228 to 2,492,827
lomR
OKFHMN_12990: OKFHMN_12990 - host specificity protein J, at 2,492,895 to 2,493,395
_12990
OKFHMN_12995: OKFHMN_12995 - CPS-53 (KpLE1) prophage protein, at 2,493,634 to 2,494,020
_12995
OKFHMN_13000: tnp-IS3 - IS3 family transposase, at 2,494,292 to 2,494,618
tnp-IS3
OKFHMN_13005: tnp-IS3 - IS3 family transposase, at 2,494,618 to 2,495,505
tnp-IS3
Position (kb)
2493
2494
2495 Strain fitness (log2 ratio)
-1
0
1 at 2493.130 kb on + strand, within OKFHMN_12990 at 2493.577 kb on + strand at 2493.735 kb on + strand, within OKFHMN_12995 at 2493.795 kb on + strand, within OKFHMN_12995 at 2493.796 kb on - strand, within OKFHMN_12995 at 2493.816 kb on + strand, within OKFHMN_12995 at 2493.855 kb on + strand, within OKFHMN_12995 at 2493.873 kb on + strand, within OKFHMN_12995 at 2494.005 kb on + strand at 2494.027 kb on + strand at 2494.055 kb on - strand at 2494.077 kb on - strand at 2494.134 kb on - strand at 2494.134 kb on - strand at 2494.134 kb on - strand at 2494.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,493,130 + OKFHMN_12990 0.47 +0.3 2,493,577 + +0.6 2,493,735 + OKFHMN_12995 0.26 +0.1 2,493,795 + OKFHMN_12995 0.42 -0.5 2,493,796 - OKFHMN_12995 0.42 +0.5 2,493,816 + OKFHMN_12995 0.47 -0.1 2,493,855 + OKFHMN_12995 0.57 -0.4 2,493,873 + OKFHMN_12995 0.62 +0.2 2,494,005 + +0.0 2,494,027 + -0.1 2,494,055 - +1.0 2,494,077 - +0.2 2,494,134 - -0.4 2,494,134 - +0.0 2,494,134 - -0.2 2,494,134 - -0.2
Or see this region's nucleotide sequence