Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12750

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjcS and ytcA are separated by 208 nucleotidesytcA and mdtN are separated by 18 nucleotides OKFHMN_12745: yjcS - alkyl sulfatase YjcS, at 2,442,354 to 2,444,339 yjcS OKFHMN_12750: ytcA - Uncharacterized protein YtcA, at 2,444,548 to 2,444,823 ytcA OKFHMN_12755: mdtN - multidrug efflux transporter periplasmic adaptor subunit MdtN, at 2,444,842 to 2,445,873 mdtN Position (kb) 2444 2445Strain fitness (log2 ratio) -2 -1 0 1at 2443.554 kb on - strand, within yjcSat 2443.554 kb on - strand, within yjcSat 2443.554 kb on - strand, within yjcSat 2443.633 kb on - strand, within yjcSat 2443.635 kb on - strand, within yjcSat 2443.642 kb on - strand, within yjcSat 2443.683 kb on + strand, within yjcSat 2443.684 kb on - strand, within yjcSat 2443.693 kb on + strand, within yjcSat 2443.693 kb on + strand, within yjcSat 2443.693 kb on + strand, within yjcSat 2443.710 kb on + strand, within yjcSat 2443.766 kb on + strand, within yjcSat 2443.798 kb on + strand, within yjcSat 2443.799 kb on - strand, within yjcSat 2443.860 kb on - strand, within yjcSat 2443.879 kb on - strand, within yjcSat 2443.911 kb on + strand, within yjcSat 2443.949 kb on + strand, within yjcSat 2443.949 kb on + strand, within yjcSat 2443.950 kb on - strand, within yjcSat 2443.950 kb on - strand, within yjcSat 2443.950 kb on - strand, within yjcSat 2444.082 kb on - strand, within yjcSat 2444.082 kb on - strand, within yjcSat 2444.129 kb on + strand, within yjcSat 2444.130 kb on - strand, within yjcSat 2444.130 kb on - strand, within yjcSat 2444.130 kb on - strand, within yjcSat 2444.138 kb on + strand, within yjcSat 2444.139 kb on - strand, within yjcSat 2444.172 kb on + strandat 2444.173 kb on - strandat 2444.728 kb on - strand, within ytcAat 2444.773 kb on - strand, within ytcAat 2444.822 kb on - strandat 2444.958 kb on + strand, within mdtNat 2444.958 kb on + strand, within mdtNat 2444.958 kb on + strand, within mdtNat 2444.958 kb on + strand, within mdtNat 2444.958 kb on + strand, within mdtNat 2444.959 kb on - strand, within mdtNat 2444.959 kb on - strand, within mdtNat 2444.968 kb on + strand, within mdtNat 2444.968 kb on + strand, within mdtNat 2444.968 kb on + strand, within mdtNat 2444.968 kb on + strand, within mdtNat 2444.983 kb on - strand, within mdtNat 2445.021 kb on - strand, within mdtNat 2445.139 kb on - strand, within mdtNat 2445.246 kb on + strand, within mdtNat 2445.247 kb on - strand, within mdtNat 2445.247 kb on - strand, within mdtNat 2445.247 kb on - strand, within mdtNat 2445.345 kb on + strand, within mdtNat 2445.346 kb on - strand, within mdtNat 2445.353 kb on + strand, within mdtNat 2445.353 kb on + strand, within mdtNat 2445.354 kb on - strand, within mdtNat 2445.405 kb on - strand, within mdtNat 2445.405 kb on - strand, within mdtNat 2445.577 kb on + strand, within mdtNat 2445.578 kb on - strand, within mdtNat 2445.627 kb on + strand, within mdtNat 2445.762 kb on + strand, within mdtNat 2445.763 kb on - strand, within mdtNat 2445.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,443,554 - yjcS OKFHMN_12745 0.60 +0.2
2,443,554 - yjcS OKFHMN_12745 0.60 -1.3
2,443,554 - yjcS OKFHMN_12745 0.60 +0.8
2,443,633 - yjcS OKFHMN_12745 0.64 +0.3
2,443,635 - yjcS OKFHMN_12745 0.65 +0.3
2,443,642 - yjcS OKFHMN_12745 0.65 -0.5
2,443,683 + yjcS OKFHMN_12745 0.67 -0.3
2,443,684 - yjcS OKFHMN_12745 0.67 -0.0
2,443,693 + yjcS OKFHMN_12745 0.67 -0.1
2,443,693 + yjcS OKFHMN_12745 0.67 -0.1
2,443,693 + yjcS OKFHMN_12745 0.67 -0.5
2,443,710 + yjcS OKFHMN_12745 0.68 -0.4
2,443,766 + yjcS OKFHMN_12745 0.71 +0.0
2,443,798 + yjcS OKFHMN_12745 0.73 -0.0
2,443,799 - yjcS OKFHMN_12745 0.73 +0.4
2,443,860 - yjcS OKFHMN_12745 0.76 +1.1
2,443,879 - yjcS OKFHMN_12745 0.77 +0.0
2,443,911 + yjcS OKFHMN_12745 0.78 -0.2
2,443,949 + yjcS OKFHMN_12745 0.80 +0.2
2,443,949 + yjcS OKFHMN_12745 0.80 -0.5
2,443,950 - yjcS OKFHMN_12745 0.80 -0.7
2,443,950 - yjcS OKFHMN_12745 0.80 +0.4
2,443,950 - yjcS OKFHMN_12745 0.80 -0.0
2,444,082 - yjcS OKFHMN_12745 0.87 +0.3
2,444,082 - yjcS OKFHMN_12745 0.87 -0.0
2,444,129 + yjcS OKFHMN_12745 0.89 +0.1
2,444,130 - yjcS OKFHMN_12745 0.89 +0.1
2,444,130 - yjcS OKFHMN_12745 0.89 +0.9
2,444,130 - yjcS OKFHMN_12745 0.89 +0.4
2,444,138 + yjcS OKFHMN_12745 0.90 +0.7
2,444,139 - yjcS OKFHMN_12745 0.90 +0.5
2,444,172 + +0.8
2,444,173 - +0.4
2,444,728 - ytcA OKFHMN_12750 0.65 +0.5
2,444,773 - ytcA OKFHMN_12750 0.82 -1.9
2,444,822 - -0.9
2,444,958 + mdtN OKFHMN_12755 0.11 +0.8
2,444,958 + mdtN OKFHMN_12755 0.11 +0.1
2,444,958 + mdtN OKFHMN_12755 0.11 +0.0
2,444,958 + mdtN OKFHMN_12755 0.11 -0.1
2,444,958 + mdtN OKFHMN_12755 0.11 +1.0
2,444,959 - mdtN OKFHMN_12755 0.11 +0.3
2,444,959 - mdtN OKFHMN_12755 0.11 +0.4
2,444,968 + mdtN OKFHMN_12755 0.12 -0.8
2,444,968 + mdtN OKFHMN_12755 0.12 +0.4
2,444,968 + mdtN OKFHMN_12755 0.12 +0.3
2,444,968 + mdtN OKFHMN_12755 0.12 -0.5
2,444,983 - mdtN OKFHMN_12755 0.14 -0.1
2,445,021 - mdtN OKFHMN_12755 0.17 -0.2
2,445,139 - mdtN OKFHMN_12755 0.29 +0.9
2,445,246 + mdtN OKFHMN_12755 0.39 -0.7
2,445,247 - mdtN OKFHMN_12755 0.39 -0.3
2,445,247 - mdtN OKFHMN_12755 0.39 +0.1
2,445,247 - mdtN OKFHMN_12755 0.39 -0.2
2,445,345 + mdtN OKFHMN_12755 0.49 +0.5
2,445,346 - mdtN OKFHMN_12755 0.49 -0.1
2,445,353 + mdtN OKFHMN_12755 0.50 -0.8
2,445,353 + mdtN OKFHMN_12755 0.50 +0.1
2,445,354 - mdtN OKFHMN_12755 0.50 +0.0
2,445,405 - mdtN OKFHMN_12755 0.55 -0.1
2,445,405 - mdtN OKFHMN_12755 0.55 +0.1
2,445,577 + mdtN OKFHMN_12755 0.71 -2.7
2,445,578 - mdtN OKFHMN_12755 0.71 -0.2
2,445,627 + mdtN OKFHMN_12755 0.76 +0.2
2,445,762 + mdtN OKFHMN_12755 0.89 -0.6
2,445,763 - mdtN OKFHMN_12755 0.89 +0.5
2,445,811 - -0.3

Or see this region's nucleotide sequence