Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12415

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgroL and groES are separated by 43 nucleotidesgroES and yjeH are separated by 275 nucleotides OKFHMN_12410: groL - chaperonin GroEL, at 2,374,515 to 2,376,161 groL OKFHMN_12415: groES - Co-chaperonin GroES, at 2,376,205 to 2,376,498 groES OKFHMN_12420: yjeH - L-methionine/branched-chain amino acid transporter, at 2,376,774 to 2,378,030 yjeH Position (kb) 2376 2377Strain fitness (log2 ratio) -1 0 1at 2376.207 kb on - strandat 2376.552 kb on - strandat 2376.700 kb on - strandat 2376.718 kb on + strandat 2376.835 kb on + strandat 2376.835 kb on + strandat 2376.835 kb on + strandat 2376.838 kb on + strandat 2376.839 kb on - strandat 2376.880 kb on + strandat 2376.891 kb on - strandat 2376.891 kb on - strandat 2376.925 kb on + strand, within yjeHat 2376.925 kb on + strand, within yjeHat 2376.925 kb on + strand, within yjeHat 2376.926 kb on - strand, within yjeHat 2376.926 kb on - strand, within yjeHat 2376.969 kb on + strand, within yjeHat 2377.127 kb on + strand, within yjeHat 2377.127 kb on + strand, within yjeHat 2377.128 kb on - strand, within yjeHat 2377.176 kb on + strand, within yjeHat 2377.176 kb on + strand, within yjeHat 2377.177 kb on - strand, within yjeHat 2377.177 kb on - strand, within yjeHat 2377.177 kb on - strand, within yjeHat 2377.178 kb on + strand, within yjeHat 2377.178 kb on + strand, within yjeHat 2377.224 kb on - strand, within yjeHat 2377.236 kb on - strand, within yjeHat 2377.236 kb on - strand, within yjeHat 2377.274 kb on + strand, within yjeHat 2377.462 kb on + strand, within yjeHat 2377.463 kb on - strand, within yjeHat 2377.463 kb on - strand, within yjeHat 2377.467 kb on + strand, within yjeHat 2377.478 kb on + strand, within yjeHat 2377.492 kb on + strand, within yjeHat 2377.492 kb on + strand, within yjeH

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,376,207 - +0.1
2,376,552 - +1.0
2,376,700 - -0.3
2,376,718 + +0.9
2,376,835 + +0.4
2,376,835 + -0.1
2,376,835 + -0.3
2,376,838 + +0.5
2,376,839 - +0.4
2,376,880 + -0.2
2,376,891 - -0.2
2,376,891 - +0.1
2,376,925 + yjeH OKFHMN_12420 0.12 +0.4
2,376,925 + yjeH OKFHMN_12420 0.12 -1.0
2,376,925 + yjeH OKFHMN_12420 0.12 -0.2
2,376,926 - yjeH OKFHMN_12420 0.12 +0.3
2,376,926 - yjeH OKFHMN_12420 0.12 +0.2
2,376,969 + yjeH OKFHMN_12420 0.16 +0.1
2,377,127 + yjeH OKFHMN_12420 0.28 +0.0
2,377,127 + yjeH OKFHMN_12420 0.28 -0.3
2,377,128 - yjeH OKFHMN_12420 0.28 +0.4
2,377,176 + yjeH OKFHMN_12420 0.32 +0.4
2,377,176 + yjeH OKFHMN_12420 0.32 -0.3
2,377,177 - yjeH OKFHMN_12420 0.32 -0.0
2,377,177 - yjeH OKFHMN_12420 0.32 +0.0
2,377,177 - yjeH OKFHMN_12420 0.32 +1.2
2,377,178 + yjeH OKFHMN_12420 0.32 -0.1
2,377,178 + yjeH OKFHMN_12420 0.32 +0.3
2,377,224 - yjeH OKFHMN_12420 0.36 +0.6
2,377,236 - yjeH OKFHMN_12420 0.37 +0.5
2,377,236 - yjeH OKFHMN_12420 0.37 +0.3
2,377,274 + yjeH OKFHMN_12420 0.40 +0.4
2,377,462 + yjeH OKFHMN_12420 0.55 -0.3
2,377,463 - yjeH OKFHMN_12420 0.55 +0.3
2,377,463 - yjeH OKFHMN_12420 0.55 +0.5
2,377,467 + yjeH OKFHMN_12420 0.55 -0.9
2,377,478 + yjeH OKFHMN_12420 0.56 +0.0
2,377,492 + yjeH OKFHMN_12420 0.57 +1.0
2,377,492 + yjeH OKFHMN_12420 0.57 +0.5

Or see this region's nucleotide sequence