Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12135

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntulaF and ulaE overlap by 1 nucleotidesulaE and ulaD are separated by 9 nucleotidesulaD and ulaC are separated by 13 nucleotidesulaC and ulaB are separated by 9 nucleotidesulaB and ulaA are separated by 15 nucleotides OKFHMN_12125: ulaF - L-ribulose-5-phosphate 4-epimerase UlaF, at 2,323,413 to 2,324,099 ulaF OKFHMN_12130: ulaE - L-ribulose-5-phosphate 3-epimerase UlaE, at 2,324,099 to 2,324,953 ulaE OKFHMN_12135: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 2,324,963 to 2,325,613 ulaD OKFHMN_12140: ulaC - PTS ascorbate transporter subunit IIA, at 2,325,627 to 2,326,091 ulaC OKFHMN_12145: ulaB - PTS ascorbate transporter subunit IIB, at 2,326,101 to 2,326,406 ulaB OKFHMN_12150: ulaA - PTS ascorbate transporter subunit IIC, at 2,326,422 to 2,327,819 ulaA Position (kb) 2324 2325 2326Strain fitness (log2 ratio) -2 -1 0 1at 2324.010 kb on - strand, within ulaFat 2324.100 kb on + strandat 2324.211 kb on + strand, within ulaEat 2324.324 kb on + strand, within ulaEat 2324.325 kb on - strand, within ulaEat 2324.433 kb on + strand, within ulaEat 2324.586 kb on + strand, within ulaEat 2324.589 kb on + strand, within ulaEat 2324.654 kb on - strand, within ulaEat 2324.660 kb on - strand, within ulaEat 2324.835 kb on - strand, within ulaEat 2324.954 kb on - strandat 2325.392 kb on - strand, within ulaDat 2325.392 kb on - strand, within ulaDat 2325.663 kb on + strandat 2325.922 kb on + strand, within ulaCat 2325.961 kb on + strand, within ulaCat 2325.961 kb on + strand, within ulaCat 2325.962 kb on - strand, within ulaCat 2326.084 kb on - strandat 2326.102 kb on + strandat 2326.103 kb on - strandat 2326.195 kb on + strand, within ulaBat 2326.195 kb on + strand, within ulaBat 2326.235 kb on + strand, within ulaBat 2326.305 kb on - strand, within ulaBat 2326.305 kb on - strand, within ulaBat 2326.398 kb on + strandat 2326.407 kb on - strandat 2326.424 kb on - strandat 2326.493 kb on + strandat 2326.494 kb on - strandat 2326.494 kb on - strandat 2326.494 kb on - strandat 2326.494 kb on - strandat 2326.495 kb on + strandat 2326.495 kb on + strandat 2326.495 kb on + strandat 2326.495 kb on + strandat 2326.495 kb on + strandat 2326.495 kb on + strandat 2326.496 kb on - strandat 2326.496 kb on - strandat 2326.496 kb on - strandat 2326.496 kb on - strandat 2326.610 kb on + strand, within ulaA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
2,324,010 - ulaF OKFHMN_12125 0.87 -0.3
2,324,100 + +0.3
2,324,211 + ulaE OKFHMN_12130 0.13 -0.0
2,324,324 + ulaE OKFHMN_12130 0.26 -0.1
2,324,325 - ulaE OKFHMN_12130 0.26 +0.1
2,324,433 + ulaE OKFHMN_12130 0.39 -0.8
2,324,586 + ulaE OKFHMN_12130 0.57 -2.1
2,324,589 + ulaE OKFHMN_12130 0.57 +0.6
2,324,654 - ulaE OKFHMN_12130 0.65 -0.5
2,324,660 - ulaE OKFHMN_12130 0.66 -0.6
2,324,835 - ulaE OKFHMN_12130 0.86 +0.6
2,324,954 - +0.5
2,325,392 - ulaD OKFHMN_12135 0.66 -0.3
2,325,392 - ulaD OKFHMN_12135 0.66 -0.9
2,325,663 + -0.7
2,325,922 + ulaC OKFHMN_12140 0.63 -0.6
2,325,961 + ulaC OKFHMN_12140 0.72 +0.5
2,325,961 + ulaC OKFHMN_12140 0.72 -0.5
2,325,962 - ulaC OKFHMN_12140 0.72 -2.2
2,326,084 - +1.6
2,326,102 + -0.1
2,326,103 - -0.5
2,326,195 + ulaB OKFHMN_12145 0.31 +0.2
2,326,195 + ulaB OKFHMN_12145 0.31 -0.2
2,326,235 + ulaB OKFHMN_12145 0.44 -0.0
2,326,305 - ulaB OKFHMN_12145 0.67 -2.4
2,326,305 - ulaB OKFHMN_12145 0.67 +0.0
2,326,398 + -0.6
2,326,407 - -0.2
2,326,424 - +0.0
2,326,493 + +0.1
2,326,494 - -0.4
2,326,494 - -0.1
2,326,494 - -1.3
2,326,494 - -0.1
2,326,495 + -0.2
2,326,495 + -1.1
2,326,495 + -0.4
2,326,495 + -0.1
2,326,495 + -1.3
2,326,495 + +0.0
2,326,496 - +1.1
2,326,496 - +0.3
2,326,496 - -0.3
2,326,496 - +0.0
2,326,610 + ulaA OKFHMN_12150 0.13 -1.9

Or see this region's nucleotide sequence