Strain Fitness in Escherichia coli ECRC100 around OKFHMN_11650

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_11635 and OKFHMN_11640 are separated by 101 nucleotidesOKFHMN_11640 and OKFHMN_11645 are separated by 159 nucleotidesOKFHMN_11645 and OKFHMN_11650 are separated by 369 nucleotidesOKFHMN_11650 and uvrD are separated by 128 nucleotides OKFHMN_11635: OKFHMN_11635 - Transposase, IS4 family protein, at 2,210,301 to 2,210,546 _11635 OKFHMN_11640: OKFHMN_11640 - Transposase, at 2,210,648 to 2,210,734 _11640 OKFHMN_11645: OKFHMN_11645 - Orf, at 2,210,894 to 2,210,932 _11645 OKFHMN_11650: OKFHMN_11650 - Orf, at 2,211,302 to 2,211,370 _11650 OKFHMN_11655: uvrD - DNA helicase, at 2,211,499 to 2,213,613 uvrD Position (kb) 2211 2212Strain fitness (log2 ratio) -2 -1 0 1at 2210.541 kb on + strandat 2210.541 kb on + strandat 2210.618 kb on - strandat 2210.925 kb on - strand, within OKFHMN_11645at 2210.927 kb on - strand, within OKFHMN_11645at 2211.077 kb on - strandat 2211.332 kb on - strand, within OKFHMN_11650at 2211.452 kb on - strandat 2211.557 kb on - strandat 2211.598 kb on - strandat 2211.638 kb on - strandat 2211.777 kb on + strand, within uvrDat 2211.778 kb on - strand, within uvrDat 2211.778 kb on - strand, within uvrDat 2211.835 kb on - strand, within uvrDat 2211.943 kb on - strand, within uvrDat 2211.968 kb on - strand, within uvrDat 2211.977 kb on + strand, within uvrDat 2211.978 kb on - strand, within uvrDat 2212.114 kb on - strand, within uvrDat 2212.116 kb on + strand, within uvrDat 2212.116 kb on + strand, within uvrDat 2212.116 kb on + strand, within uvrDat 2212.141 kb on - strand, within uvrDat 2212.152 kb on + strand, within uvrDat 2212.152 kb on + strand, within uvrDat 2212.152 kb on + strand, within uvrDat 2212.153 kb on - strand, within uvrDat 2212.153 kb on - strand, within uvrDat 2212.215 kb on + strand, within uvrDat 2212.221 kb on + strand, within uvrDat 2212.221 kb on + strand, within uvrDat 2212.222 kb on - strand, within uvrDat 2212.222 kb on - strand, within uvrDat 2212.263 kb on + strand, within uvrDat 2212.269 kb on + strand, within uvrDat 2212.270 kb on - strand, within uvrDat 2212.270 kb on - strand, within uvrDat 2212.270 kb on - strand, within uvrDat 2212.270 kb on - strand, within uvrDat 2212.271 kb on + strand, within uvrDat 2212.271 kb on + strand, within uvrDat 2212.276 kb on + strand, within uvrD

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,210,541 + -0.3
2,210,541 + -0.6
2,210,618 - +0.1
2,210,925 - OKFHMN_11645 0.79 +0.1
2,210,927 - OKFHMN_11645 0.85 +0.0
2,211,077 - -2.4
2,211,332 - OKFHMN_11650 0.43 -0.6
2,211,452 - -0.9
2,211,557 - +0.9
2,211,598 - -1.0
2,211,638 - +0.6
2,211,777 + uvrD OKFHMN_11655 0.13 +0.2
2,211,778 - uvrD OKFHMN_11655 0.13 -1.5
2,211,778 - uvrD OKFHMN_11655 0.13 +0.4
2,211,835 - uvrD OKFHMN_11655 0.16 +0.4
2,211,943 - uvrD OKFHMN_11655 0.21 -1.0
2,211,968 - uvrD OKFHMN_11655 0.22 +0.9
2,211,977 + uvrD OKFHMN_11655 0.23 +1.2
2,211,978 - uvrD OKFHMN_11655 0.23 +0.6
2,212,114 - uvrD OKFHMN_11655 0.29 -0.2
2,212,116 + uvrD OKFHMN_11655 0.29 +0.3
2,212,116 + uvrD OKFHMN_11655 0.29 +0.0
2,212,116 + uvrD OKFHMN_11655 0.29 +0.3
2,212,141 - uvrD OKFHMN_11655 0.30 -0.0
2,212,152 + uvrD OKFHMN_11655 0.31 -0.4
2,212,152 + uvrD OKFHMN_11655 0.31 -1.9
2,212,152 + uvrD OKFHMN_11655 0.31 +0.2
2,212,153 - uvrD OKFHMN_11655 0.31 +0.5
2,212,153 - uvrD OKFHMN_11655 0.31 +0.2
2,212,215 + uvrD OKFHMN_11655 0.34 +0.8
2,212,221 + uvrD OKFHMN_11655 0.34 +1.6
2,212,221 + uvrD OKFHMN_11655 0.34 -0.7
2,212,222 - uvrD OKFHMN_11655 0.34 +1.0
2,212,222 - uvrD OKFHMN_11655 0.34 -1.5
2,212,263 + uvrD OKFHMN_11655 0.36 +0.4
2,212,269 + uvrD OKFHMN_11655 0.36 +0.2
2,212,270 - uvrD OKFHMN_11655 0.36 +0.8
2,212,270 - uvrD OKFHMN_11655 0.36 +0.5
2,212,270 - uvrD OKFHMN_11655 0.36 -0.3
2,212,270 - uvrD OKFHMN_11655 0.36 -0.6
2,212,271 + uvrD OKFHMN_11655 0.37 -0.4
2,212,271 + uvrD OKFHMN_11655 0.37 +0.0
2,212,276 + uvrD OKFHMN_11655 0.37 +1.0

Or see this region's nucleotide sequence