Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lasT and arcA are separated by 635 nucleotides arcA and creD are separated by 59 nucleotides
OKFHMN_11120: lasT - tRNA/rRNA methyltransferase, at 2,103,196 to 2,103,882
lasT
OKFHMN_11125: arcA - two-component system response regulator ArcA, at 2,104,518 to 2,105,234
arcA
OKFHMN_11130: creD - cell envelope integrity protein CreD, at 2,105,294 to 2,106,646
creD
Position (kb)
2104
2105
2106 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2103.624 kb on - strand, within lasT at 2103.877 kb on - strand at 2103.882 kb on + strand at 2103.969 kb on - strand at 2103.989 kb on + strand at 2103.993 kb on + strand at 2104.055 kb on - strand at 2104.126 kb on + strand at 2104.126 kb on + strand at 2104.126 kb on + strand at 2104.127 kb on - strand at 2104.127 kb on - strand at 2104.132 kb on + strand at 2104.156 kb on - strand at 2104.161 kb on - strand at 2104.176 kb on - strand at 2104.183 kb on - strand at 2104.217 kb on - strand at 2104.231 kb on + strand at 2104.231 kb on + strand at 2104.233 kb on + strand at 2104.234 kb on - strand at 2104.234 kb on - strand at 2104.234 kb on - strand at 2104.284 kb on - strand at 2104.284 kb on - strand at 2104.362 kb on + strand at 2104.362 kb on + strand at 2104.362 kb on + strand at 2104.362 kb on + strand at 2104.407 kb on + strand at 2104.407 kb on + strand at 2104.408 kb on - strand at 2104.411 kb on + strand at 2104.411 kb on + strand at 2104.411 kb on + strand at 2104.439 kb on + strand at 2105.159 kb on + strand, within arcA at 2105.242 kb on + strand at 2105.242 kb on + strand at 2105.309 kb on + strand at 2105.309 kb on + strand at 2105.309 kb on + strand at 2105.368 kb on - strand at 2105.368 kb on - strand at 2105.547 kb on + strand, within creD at 2105.547 kb on + strand, within creD at 2105.548 kb on - strand, within creD at 2105.609 kb on - strand, within creD at 2105.637 kb on + strand, within creD at 2105.670 kb on + strand, within creD at 2105.685 kb on - strand, within creD at 2105.754 kb on + strand, within creD at 2105.755 kb on - strand, within creD at 2105.758 kb on + strand, within creD at 2105.758 kb on + strand, within creD at 2105.758 kb on + strand, within creD at 2105.758 kb on + strand, within creD at 2105.774 kb on + strand, within creD at 2105.774 kb on + strand, within creD at 2105.775 kb on - strand, within creD at 2105.782 kb on - strand, within creD at 2105.876 kb on - strand, within creD at 2105.876 kb on - strand, within creD at 2105.920 kb on + strand, within creD at 2105.921 kb on - strand, within creD at 2106.053 kb on - strand, within creD at 2106.100 kb on + strand, within creD at 2106.220 kb on + strand, within creD
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,103,624 - lasT OKFHMN_11120 0.62 +0.7 2,103,877 - -3.6 2,103,882 + -0.7 2,103,969 - +0.3 2,103,989 + +0.0 2,103,993 + +0.4 2,104,055 - -0.5 2,104,126 + -0.7 2,104,126 + +0.5 2,104,126 + +0.4 2,104,127 - -0.6 2,104,127 - -1.1 2,104,132 + +0.1 2,104,156 - +1.2 2,104,161 - +1.8 2,104,176 - -0.1 2,104,183 - +0.2 2,104,217 - -2.5 2,104,231 + +0.0 2,104,231 + +0.3 2,104,233 + +0.2 2,104,234 - +0.4 2,104,234 - -2.5 2,104,234 - -0.2 2,104,284 - +1.1 2,104,284 - -0.0 2,104,362 + -0.4 2,104,362 + +0.7 2,104,362 + +0.3 2,104,362 + +0.4 2,104,407 + +0.0 2,104,407 + +2.2 2,104,408 - -1.8 2,104,411 + +0.4 2,104,411 + +0.3 2,104,411 + +1.2 2,104,439 + -0.3 2,105,159 + arcA OKFHMN_11125 0.89 +0.5 2,105,242 + -0.0 2,105,242 + -0.5 2,105,309 + +0.3 2,105,309 + -0.1 2,105,309 + -0.5 2,105,368 - -0.4 2,105,368 - +1.4 2,105,547 + creD OKFHMN_11130 0.19 +0.6 2,105,547 + creD OKFHMN_11130 0.19 +1.4 2,105,548 - creD OKFHMN_11130 0.19 -0.6 2,105,609 - creD OKFHMN_11130 0.23 +0.3 2,105,637 + creD OKFHMN_11130 0.25 -0.2 2,105,670 + creD OKFHMN_11130 0.28 +0.4 2,105,685 - creD OKFHMN_11130 0.29 +0.4 2,105,754 + creD OKFHMN_11130 0.34 +0.0 2,105,755 - creD OKFHMN_11130 0.34 -0.6 2,105,758 + creD OKFHMN_11130 0.34 +0.5 2,105,758 + creD OKFHMN_11130 0.34 +0.7 2,105,758 + creD OKFHMN_11130 0.34 +1.0 2,105,758 + creD OKFHMN_11130 0.34 +1.0 2,105,774 + creD OKFHMN_11130 0.35 -0.2 2,105,774 + creD OKFHMN_11130 0.35 -0.7 2,105,775 - creD OKFHMN_11130 0.36 -0.4 2,105,782 - creD OKFHMN_11130 0.36 +0.4 2,105,876 - creD OKFHMN_11130 0.43 +1.2 2,105,876 - creD OKFHMN_11130 0.43 +0.4 2,105,920 + creD OKFHMN_11130 0.46 -0.2 2,105,921 - creD OKFHMN_11130 0.46 -1.2 2,106,053 - creD OKFHMN_11130 0.56 +0.3 2,106,100 + creD OKFHMN_11130 0.60 -1.4 2,106,220 + creD OKFHMN_11130 0.68 +1.0
Or see this region's nucleotide sequence