Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10010

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyafC and dkgB overlap by 4 nucleotidesdkgB and Asp_trna are separated by 162 nucleotidesAsp_trna and 5S_rrna are separated by 54 nucleotides5S_rrna and 23S_rrna are separated by 94 nucleotides OKFHMN_10000: yafC - DNA-binding transcriptional regulator YafC, at 1,868,982 to 1,869,896 yafC OKFHMN_10005: dkgB - 2,5-didehydrogluconate reductase DkgB, at 1,869,893 to 1,870,696 dkgB OKFHMN_10010: Asp_trna - tRNA-Asp(gtc), at 1,870,859 to 1,870,935 _trna OKFHMN_10015: 5S_rrna - 5S ribosomal RNA, at 1,870,990 to 1,871,105 _rrna OKFHMN_10020: 23S_rrna - 23S ribosomal RNA, at 1,871,200 to 1,874,102 _rrna Position (kb) 1870 1871Strain fitness (log2 ratio) -1 0 1 2at 1869.967 kb on + strandat 1870.006 kb on + strand, within dkgBat 1870.064 kb on - strand, within dkgBat 1870.150 kb on - strand, within dkgBat 1870.164 kb on + strand, within dkgBat 1870.164 kb on + strand, within dkgBat 1870.165 kb on - strand, within dkgBat 1870.171 kb on + strand, within dkgBat 1870.172 kb on - strand, within dkgBat 1870.172 kb on - strand, within dkgBat 1870.172 kb on - strand, within dkgBat 1870.175 kb on - strand, within dkgBat 1870.250 kb on - strand, within dkgBat 1870.366 kb on + strand, within dkgBat 1870.429 kb on - strand, within dkgBat 1870.460 kb on + strand, within dkgBat 1870.582 kb on - strand, within dkgBat 1870.696 kb on + strandat 1870.696 kb on + strandat 1870.856 kb on - strandat 1870.856 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
1,869,967 + +0.3
1,870,006 + dkgB OKFHMN_10005 0.14 -0.3
1,870,064 - dkgB OKFHMN_10005 0.21 -1.2
1,870,150 - dkgB OKFHMN_10005 0.32 +0.2
1,870,164 + dkgB OKFHMN_10005 0.34 +1.0
1,870,164 + dkgB OKFHMN_10005 0.34 +0.6
1,870,165 - dkgB OKFHMN_10005 0.34 -0.4
1,870,171 + dkgB OKFHMN_10005 0.35 +1.6
1,870,172 - dkgB OKFHMN_10005 0.35 +1.0
1,870,172 - dkgB OKFHMN_10005 0.35 +0.4
1,870,172 - dkgB OKFHMN_10005 0.35 +0.8
1,870,175 - dkgB OKFHMN_10005 0.35 +0.3
1,870,250 - dkgB OKFHMN_10005 0.44 +0.3
1,870,366 + dkgB OKFHMN_10005 0.59 -0.3
1,870,429 - dkgB OKFHMN_10005 0.67 +2.0
1,870,460 + dkgB OKFHMN_10005 0.71 +0.7
1,870,582 - dkgB OKFHMN_10005 0.86 +0.0
1,870,696 + -0.5
1,870,696 + -0.7
1,870,856 - -0.2
1,870,856 - +0.0

Or see this region's nucleotide sequence